View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_116 (Length: 331)
Name: NF13763_high_116
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_116 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 55307441 - 55307125
Alignment:
| Q |
1 |
atttacaaattcaaagcttatatgtcttcgctttactcataagtaacctacctcttttctttttnnnnnnnnnnnnnnnnn-----ctaccagagtattt |
95 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
55307441 |
atttacaaattcaaagtttatatgtcttcgctttactcataagtaacctacctctttttttttttttttttaaaaaaaaaaaaaaactaccagagtattt |
55307342 |
T |
|
| Q |
96 |
aatatatgtactctaaggcaatatgcatgaatatagaaagtaattagctatagcaatgcaaacacataaattcagaacatcagctggcagtgtataatat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55307341 |
aatatatgtactctaaggcaatatgcatgaatatagaaagtaatt-gctatagcaatgcaaacacataaattcagaacatcagctggcagtgtataatat |
55307243 |
T |
|
| Q |
196 |
gcccatacaacttatttgactgtttcaaaaacacaaaatatccagcaaagtagcttcatatttgagacatgtctgtataataaagatagcgtagtcagaa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
55307242 |
gcccatacaacttatttgactgtttcaaaaacacaaaatatccagcaaagtagcttcatatttgagacatgtctgtataataaagataacgtagtcagaa |
55307143 |
T |
|
| Q |
296 |
tggcttcaagaacaacca |
313 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
55307142 |
tggcttcaagaacaacca |
55307125 |
T |
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