View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_128 (Length: 301)
Name: NF13763_high_128
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_128 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 31264254 - 31263974
Alignment:
| Q |
1 |
actcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatttatc |
100 |
Q |
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| T |
31264254 |
actcaaatgcaaatttgtcgcaacagaagtctgaattcaaggaaagttgaaagacatggaatagagcatctccgtaatattggaaagatggtaatttatc |
31264155 |
T |
|
| Q |
101 |
cgataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcctcaaaccttcatctat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264154 |
cgatgagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcctcaaaccttcatctat |
31264055 |
T |
|
| Q |
201 |
tgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatctgtttatactattgtc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264054 |
tgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatctgtttatactattgtc |
31263974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 12212656 - 12212406
Alignment:
| Q |
3 |
tcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaatttatcc |
101 |
Q |
| |
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||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| | || ||||| | |||||||| |
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| T |
12212656 |
tcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactagacagatgatgatttatcc |
12212557 |
T |
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| Q |
102 |
gataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcc-tcaaaccttcatctat |
200 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||| | ||||| ||| ||| |
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| T |
12212556 |
gatgagtaataatttatatttatggttctcaatgttatgact--atctctatc-----------tattgttaggactatctccattaaacc-acatgtat |
12212471 |
T |
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| Q |
201 |
tgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatc |
265 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| |||||| ||||||||||||||||||||| |||| |
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| T |
12212470 |
tgtaccatttcaactatccatctatataattattctaccttggtttttatatttcctcatccatc |
12212406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 13814935 - 13815186
Alignment:
| Q |
3 |
tcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaatttatcc |
101 |
Q |
| |
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||||||||||||| ||||||||||| |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| ||||||| |
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| T |
13814935 |
tcagatgcaaattcgtctcaacagatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggatagatggtgatttatct |
13815034 |
T |
|
| Q |
102 |
gataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcc-tcaaaccttcatctat |
200 |
Q |
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||| |||||||||||||| |||||| ||||| |||||||||| ||||| ||| ||||||||||||||||||| | ||||| ||| ||| |
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| T |
13815035 |
gatgagtaataatttatacttatggttctcagtgttatgact--atctccatc-----------tattgttaggactatctccattaaacc-acatgtat |
13815120 |
T |
|
| Q |
201 |
tgtaccatttcatctatcattctatctaattgttctacattggttt-ttatatttcctcatgcatc |
265 |
Q |
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|||||||||||| ||||| ||||| ||| |||||||| ||||||| |||||||||||||| |||| |
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| T |
13815121 |
tgtaccatttcaactatccatctatataaatgttctaccttggtttgttatatttcctcatccatc |
13815186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 22144839 - 22144589
Alignment:
| Q |
3 |
tcagatgcaaatttgtctcaacagaagtctgaattcaaagaaagttgaaagacatggaatagagcatctccgt-aatattggaaagatggtaatttatcc |
101 |
Q |
| |
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||||||||||||| ||||||||| | |||| ||||||| | |||||||| || ||||||||||||||||||| |||| |||| ||||||| |||||||| |
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| T |
22144839 |
tcagatgcaaattcgtctcaacaaatgtctaaattcaagggaagttgaattacgtggaatagagcatctccgtcaatactggacagatggtgatttatcc |
22144740 |
T |
|
| Q |
102 |
gataagtaataatttatatttatggatctcaatgttatgacttcatctcaatcaaaccctcaaatattgttaggactatctcc-tcaaaccttcatctat |
200 |
Q |
| |
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||| ||||||||||||||||||||| || ||||||||||||| ||||| ||| ||||||||||||||||||| | ||||| ||| ||| |
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| T |
22144739 |
gatgagtaataatttatatttatggttcgcaatgttatgact--atctccatc-----------tattgttaggactatctccattaaacc-acatgtat |
22144654 |
T |
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| Q |
201 |
tgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatc |
265 |
Q |
| |
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|||||||||||| ||||| ||||| |||||||||||| || |||| ||||| ||||||| |||| |
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| T |
22144653 |
tgtaccatttcaactatccatctatataattgttctaccttagtttatatatgtcctcatccatc |
22144589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 15852247 - 15852342
Alignment:
| Q |
185 |
tcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatctgtttatactattgt |
280 |
Q |
| |
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||||||| ||| ||||||||||||||| ||||| | ||| |||||||||||| |||||||||||||||| |||| |||| |||||||| ||||| |
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| T |
15852247 |
tcaaacccacatgtattgtaccatttcaactatccatgtatataattgttctaccttggtttttatatttcatcatccatccgtttataccattgt |
15852342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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