View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_136 (Length: 285)
Name: NF13763_high_136
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_136 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 25898381 - 25898610
Alignment:
| Q |
32 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataac |
131 |
Q |
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| T |
25898381 |
cataggaacaatattaaagcacacaacttataggaacataggaattaggagtatcatgggagaaaaactcaaaacacaatgccattgtctgaggcataac |
25898480 |
T |
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| Q |
132 |
aggtatttacaacaaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25898481 |
aggtatttacaacaaaataaaacacatgaagaggaaccttatatgatatgcttgcaagtctaatgacgacctttctggcgaacaatctcaacaaatagtg |
25898580 |
T |
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| Q |
232 |
agttaggaggatcctcaagatcaaagacca |
261 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25898581 |
agttaggaggatcctcaagatcaaagacca |
25898610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 46006486 - 46006442
Alignment:
| Q |
32 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
76 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
46006486 |
cataggaacaatattaaagcacataaattataggaacataggaat |
46006442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 12866236 - 12866192
Alignment:
| Q |
32 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
76 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
12866236 |
cataggaacaatattaaagcacataaattataggaacataggaat |
12866192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 12834258 - 12834214
Alignment:
| Q |
32 |
cataggaacaatattaaagcacacaacttataggaacataggaat |
76 |
Q |
| |
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||||||||||||||||||||||| || |||||||||| ||||||| |
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|
| T |
12834258 |
cataggaacaatattaaagcacataaattataggaacgtaggaat |
12834214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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