View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_high_138 (Length: 282)
Name: NF13763_high_138
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_138 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 784438 - 784713
Alignment:
| Q |
8 |
gaacctgtgaataaaatattaatcaaatttaattattttgatatttttg-tttacatgtttttggtacaaaatttcatgtgattagtgatgtctaaactt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
784438 |
gaacctgtgaataaaatattaatcaaatttaattattttgatatttttggtttacatgttattggtacaaaatttcatgtgattagtgatgtctaaactt |
784537 |
T |
|
| Q |
107 |
cattgaaaaatttatgagacataacgtagattttttcatttcaacannnnnnnncgtacgcaagattcatcttagttagcatttgaataacttgaatcca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
784538 |
cattgaaaaatttatgagacataacgtagatttttccatttcaacattttttttcgtacgcaagattcatcttaattagcatttgaataacttgaatcca |
784637 |
T |
|
| Q |
207 |
tgttttaaaaattggatcgaatatattgattcaaccaattgaattgagaatccatcaatttaccaatcgattcgac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
784638 |
tgttttaaaaattggatcgaatatattgattcaaccaattaaattgagaatccatcaatttaccaatcgattcgac |
784713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University