View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_high_14 (Length: 661)

Name: NF13763_high_14
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_high_14
NF13763_high_14
[»] chr1 (10 HSPs)
chr1 (18-341)||(17517096-17517428)
chr1 (463-656)||(17516734-17516926)
chr1 (335-414)||(17516956-17517035)
chr1 (335-417)||(15774290-15774371)
chr1 (348-417)||(11405506-11405573)
chr1 (342-417)||(32635184-32635258)
chr1 (335-417)||(3532952-3533032)
chr1 (348-416)||(4354084-4354150)
chr1 (335-417)||(9769556-9769639)
chr1 (335-395)||(10256594-10256653)
[»] chr4 (9 HSPs)
chr4 (348-417)||(33076580-33076648)
chr4 (348-417)||(53815746-53815813)
chr4 (348-417)||(8690264-8690331)
chr4 (348-417)||(9693012-9693079)
chr4 (348-417)||(14149843-14149910)
chr4 (348-417)||(20753103-20753170)
chr4 (348-417)||(28520709-28520776)
chr4 (350-399)||(31587489-31587538)
chr4 (348-417)||(48968188-48968255)
[»] chr2 (4 HSPs)
chr2 (335-414)||(11837025-11837103)
chr2 (348-417)||(580761-580828)
chr2 (348-417)||(34018048-34018115)
chr2 (349-417)||(3179375-3179441)
[»] chr8 (8 HSPs)
chr8 (350-417)||(24074558-24074623)
chr8 (348-417)||(1588817-1588884)
chr8 (348-417)||(13702330-13702397)
chr8 (349-414)||(44070349-44070412)
chr8 (335-417)||(7649565-7649645)
chr8 (348-417)||(2800069-2800136)
chr8 (348-417)||(33570407-33570474)
chr8 (349-417)||(25689366-25689432)
[»] chr3 (12 HSPs)
chr3 (342-417)||(50724411-50724484)
chr3 (342-417)||(50788364-50788437)
chr3 (350-414)||(48173338-48173400)
chr3 (350-417)||(14417920-14417985)
chr3 (352-417)||(24136728-24136793)
chr3 (348-417)||(27183659-27183726)
chr3 (348-417)||(33206807-33206874)
chr3 (348-417)||(36727441-36727508)
chr3 (341-406)||(42823974-42824037)
chr3 (348-417)||(43566774-43566841)
chr3 (348-417)||(46328902-46328969)
chr3 (348-417)||(52030171-52030238)
[»] chr7 (7 HSPs)
chr7 (342-417)||(21882170-21882246)
chr7 (348-417)||(47635100-47635166)
chr7 (371-417)||(22047593-22047637)
chr7 (360-417)||(3948116-3948173)
chr7 (348-417)||(22797953-22798022)
chr7 (348-417)||(47552263-47552330)
chr7 (349-417)||(34948157-34948223)
[»] chr6 (4 HSPs)
chr6 (348-411)||(20568239-20568302)
chr6 (335-416)||(29284154-29284234)
chr6 (348-417)||(25020506-25020573)
chr6 (349-417)||(5134412-5134478)
[»] chr5 (2 HSPs)
chr5 (348-417)||(843346-843413)
chr5 (335-416)||(38230184-38230263)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 17517428 - 17517096
Alignment:
Q  18 attataataagtagaacatagtgcaaaatataaaggaaccacaatgttctcaccttattttgttcaagagtacactctttgaaaacaagacactcacact 117  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17517428 attataataagtaaaacataatgcaaaatataaaggaaccacaatgttctcaccttattttgttcaagagtgcactctttgaaaacaagacactcacact 17517329  T
Q  118 cctatcctatcctatataatgtatgaaaatatattacaacttgtgcttaaatctattggattcatataaaccattttcttggtgtctatatatatgatgc 217  Q
    ||||||||||  |||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17517328 cctatcctata-tatagaatgtatgaaaatgtattgcaacttgtgcttaaatctattggattcatataaaccattttcttggtgtctatatatatgatgc 17517230  T
Q  218 catgatgctctttctcatgcc----------atgcgcaccatataatgttcctcacactaatcacacatgcttttacatatcaaatannnnnnnnnngtc 307  Q
    |||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||    
T  17517229 catgatgctctttctcatgccatgccatgccatgcgcaccatataatgttcctcacactaatcacacatgcttttacatatcaaatattttttttttgtc 17517130  T
Q  308 ttgtctttttgactttgtgcatgattaatatgta 341  Q
    ||||||||||||||||||||||||||| ||||||    
T  17517129 ttgtctttttgactttgtgcatgattattatgta 17517096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 463 - 656
Target Start/End: Complemental strand, 17516926 - 17516734
Alignment:
Q  463 ttcatcttgaagtttcctaatcttcttcttaatagtattatattggtaattgattaaaagaaattcaaactatattggtatgcagaattcagaaagccta 562  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516926 ttcatctt-aagtttcctaatcttcttcttaatagtattatattggtaattgattaaaagaaattcaaactatattggtatgcagaattcagaaagccta 17516828  T
Q  563 ccaagaagtatggtaaacaaaactgattaccttttccaaatagtaaaagacagctgtttgataaatttgtcacgagattagtagttagtataat 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17516827 ccaagaagtatggtaaacaaaactgattaccttttccaaatagtaaaagacagctgtttgataaatttgtcacgagattagtagttagtataat 17516734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 17517035 - 17516956
Alignment:
Q  335 atatgtagggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacct 414  Q
    ||||||||||||||| |||||||||| ||||||  ||||||||| ||||||||||| |||||||||||||||| ||||||    
T  17517035 atatgtagggttcggattcgaacctcagacaccccgcttattcatcttataaagataaatttctagccactaaactacct 17516956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 15774371 - 15774290
Alignment:
Q  335 atatgtagggttcggg-ttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||| ||||| |||||||| ||||||||   |||||||||||||||| | |||||| |||||||||||||||||||||    
T  15774371 atatgtaggggtcggggttcgaaccccggacaccccacttattcaccttataagg-tgaatt-ctagccactaagctacctgac 15774290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 11405506 - 11405573
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||||||| ||| |||| |||||||||||||||||||||||    
T  11405506 gggttcgaaccccggacaccccacttattcaccttat-aaggtgaa-ttctagccactaagctacctgac 11405573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 32635184 - 32635258
Alignment:
Q  342 gggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||| ||||||||||| ||||||||   ||||||||||||| | || ||||||||||||||||| ||||| ||||    
T  32635184 gggttggggttcgaaccccggacaccccacttattcacctta-agaggtgaatttctagccactaggctacttgac 32635258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 3533032 - 3532952
Alignment:
Q  335 atatgtagggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||| |||||||| |||| ||||||||   |||||||||||||| ||| |||| ||||||| |||| ||||||||||    
T  3533032 atatgtaggggtcgggttccaaccccggacaccccacttattcaccttat-aaggtgaa-ttctagctactaggctacctgac 3532952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 4354150 - 4354084
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctga 416  Q
    |||||||||| |||||||||   |||||||||||||||||| |||| |||||||||| | |||||||||    
T  4354150 gggttcgaacttcggacaccccacttattcaccttataaag-tgaa-ttctagccaccaggctacctga 4354084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 9769639 - 9769556
Alignment:
Q  335 atatgtaggg-ttcgggttcgaacctcggacaccttgcttattcacctt-ataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||| || ||||||||||| ||||||||   |||||||||||| | |||| |||||| ||| |||||||||||||||||    
T  9769639 atatgtagggattggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt-ctaaccactaagctacctgac 9769556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 10256653 - 10256594
Alignment:
Q  335 atatgtagggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatt 395  Q
    ||||||| |||| ||||| ||||| |||| ||||| ||||||||||||| |||||||||||    
T  10256653 atatgtatggttggggtttgaaccccggataccttacttattcacctta-aaagatgaatt 10256594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 33076580 - 33076648
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| |||||||| | ||||||||||||| ||||||||| || ||||||||| ||||||||||    
T  33076580 gggttcgaaccccggacaccctacttattcaccttaaaaagatgaa-ttatagccactatgctacctgac 33076648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 53815746 - 53815813
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||  ||||||  ||||||||||||||||| ||||||||||    
T  53815746 gggttcgaaccccggacaccccacttattcac--tataaaagtgaatttctagccactaggctacctgac 53815813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 8690264 - 8690331
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  8690264 gggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctgac 8690331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 9693012 - 9693079
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  9693012 gggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctgac 9693079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 14149843 - 14149910
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  14149843 gggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctgac 14149910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 20753170 - 20753103
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  20753170 gggttcgaaccccggacaccacacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 20753103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 28520776 - 28520709
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  28520776 gggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctgac 28520709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 31587489 - 31587538
Alignment:
Q  350 gttcgaacctcggacaccttgcttattcaccttataaagatgaatttcta 399  Q
    |||||||  ||| ||| ||| |||||||||||||||||||||||||||||    
T  31587489 gttcgaatttcgaacatcttacttattcaccttataaagatgaatttcta 31587538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 48968255 - 48968188
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  48968255 gggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctgac 48968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 11837025 - 11837103
Alignment:
Q  335 atatgtagggttcggg-ttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacct 414  Q
    |||||||||| ||||| |||||||| |||||||||  |||||||||||||||||| |||| |||||||||||| |||||||    
T  11837025 atatgtaggggtcggggttcgaaccccggacacctcacttattcaccttataaag-tgaa-ttctagccactaggctacct 11837103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 580828 - 580761
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  580828 gggttcgaaccccggacaccccacttattcaccttat-aagatgaa-ttctagccactaggctacctgac 580761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 34018115 - 34018048
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||||||||||||   |||||||||||||| ||| |||| ||||| |||||| ||||||||||    
T  34018115 gggttcgaacctcggacaccccacttattcaccttat-aaggtgaa-ttctaaccactaggctacctgac 34018048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 417
Target Start/End: Original strand, 3179375 - 3179441
Alignment:
Q  349 ggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||||| ||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  3179375 ggttcgaacctcagacaccccacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 3179441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 24074558 - 24074623
Alignment:
Q  350 gttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||||||||||||  |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  24074558 gttcgaacctcggacacctcacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 24074623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 1588817 - 1588884
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||||||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  1588817 gggttcgaacctcggacaccccacttattcacttta-aaag-tgaatttctagccactatgctacctgac 1588884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 13702397 - 13702330
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||||| |||||||  |||||||||||||| ||| |||| ||||||||||||||||| |||||    
T  13702397 gggttcgaacctcagacacctcacttattcaccttat-aaggtgaa-ttctagccactaagctagctgac 13702330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 44070412 - 44070349
Alignment:
Q  349 ggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacct 414  Q
    ||||||||||||||||||| | |||||||||||||| ||| |||| ||||||||||||| ||||||    
T  44070412 ggttcgaacctcggacaccctacttattcaccttat-aaggtgaa-ttctagccactaaactacct 44070349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 7649565 - 7649645
Alignment:
Q  335 atatgtagggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||| | |||||||||||||| |||||   |||||||||||||  ||| |||| |||||||||||| ||||||||||    
T  7649565 atatgtagggctggggttcgaacctcgaacaccccacttattcacctta-caaggtgaa-ttctagccactaggctacctgac 7649645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 2800069 - 2800136
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  2800069 gggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctgac 2800136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 33570474 - 33570407
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||||||||||||   |||||||||||||| ||| |||| ||||||||||||| |||| ||||    
T  33570474 gggttcgaacctcggacaccccacttattcaccttat-aaggtgaa-ttctagccactaaactacttgac 33570407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 25689432 - 25689366
Alignment:
Q  349 ggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||| |||||||| | |||| ||||||||||||| |||| ||||| |||||| ||||||||||    
T  25689432 ggttcgaaccccggacaccctacttaatcaccttataaag-tgaa-ttctaaccactaggctacctgac 25689366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 342 - 417
Target Start/End: Original strand, 50724411 - 50724484
Alignment:
Q  342 gggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||| ||||||||||||||||||||   ||||||||||||| |||| |||| |||||||||||| ||||||||||    
T  50724411 gggttggggttcgaacctcggacaccccacttattcaccttaaaaag-tgaa-ttctagccactaggctacctgac 50724484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 50788437 - 50788364
Alignment:
Q  342 gggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||| ||||||||||||||||||||   ||||||||||||| |||| |||| |||||||||||| ||||||||||    
T  50788437 gggttggggttcgaacctcggacaccccacttattcaccttaaaaag-tgaa-ttctagccactaggctacctgac 50788364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 48173338 - 48173400
Alignment:
Q  350 gttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacct 414  Q
    ||||||||| |||||||||  |||||||||||||| ||| |||| ||||||||||||||||||||    
T  48173338 gttcgaaccccggacacctcacttattcaccttat-aaggtgaa-ttctagccactaagctacct 48173400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 14417920 - 14417985
Alignment:
Q  350 gttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||| ||||||||   |||||||||||||||| | |||||| |||||||||||||||||||||    
T  14417920 gttcgaaccccggacaccccacttattcaccttataagg-tgaatt-ctagccactaagctacctgac 14417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 24136793 - 24136728
Alignment:
Q  352 tcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||| ||||    
T  24136793 tcgaaccccggacaccccacttattcactttaaaaaggtgaatttctagccactaggctacttgac 24136728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 27183726 - 27183659
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| ||||||||||    
T  27183726 gggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctgac 27183659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 33206807 - 33206874
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  33206807 gggttcgaaccccggacaccccacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 33206874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 36727508 - 36727441
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||||||||||||   |||||||| ||||| ||| |||| |||||||||||||| ||||||||    
T  36727508 gggttcgaacctcggacaccccacttattcatcttat-aaggtgaa-ttctagccactaagttacctgac 36727441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 406
Target Start/End: Complemental strand, 42824037 - 42823974
Alignment:
Q  341 agggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccacta 406  Q
    |||||| ||||||||| |||||||||| | ||||||||| ||| |||| |||||||||||||||||    
T  42824037 agggttggggttcgaatctcggacaccctacttattcacttta-aaag-tgaatttctagccacta 42823974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 43566841 - 43566774
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||||| ||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  43566841 gggttcgaacctcagacaccccacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 43566774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 46328969 - 46328902
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  46328969 gggttcgaaccccggacaccccacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 46328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 52030171 - 52030238
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| |||||||| | ||||||||| ||| |||| ||||||| ||||||||| ||||||||||    
T  52030171 gggttcgaaccccggacaccctacttattcacttta-aaag-tgaatttttagccactaggctacctgac 52030238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 21882246 - 21882170
Alignment:
Q  342 gggttcgggttcgaacctcggacaccttgcttattcaccttat-aaagatgaatttctagccactaagctacctgac 417  Q
    |||| |||||| ||| | ||||||||| ||||||||||||||| |||| |||||||||||| |||| ||||| ||||    
T  21882246 gggtccgggtttgaagcccggacacctcgcttattcaccttatgaaaggtgaatttctagctactaggctacttgac 21882170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 47635100 - 47635166
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||||||||||||||   |||||||| ||| ||   ||||||||||||||||| ||||||||||    
T  47635100 gggttcgaacctcggacacctcatttattcactttaaaa---tgaatttctagccactaggctacctgac 47635166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 22047593 - 22047637
Alignment:
Q  371 cttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  22047593 cttattcaccttataa-gatgaatt-ctagccactaagctacctgac 22047637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 3948116 - 3948173
Alignment:
Q  360 cggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||  |||||||| ||||||||  |||||||||||||||||| |||| ||||    
T  3948116 cggacacctcacttattcatcttataaatgtgaatttctagccactaaactacttgac 3948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 22797953 - 22798022
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||| |||  |||||||||| || ||||  |||||||||||||||| ||||| ||||    
T  22797953 gggttcgaaccccggactcctcacttattcaccataaaaaggggaatttctagccactaggctacttgac 22798022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 47552263 - 47552330
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| |||||||| | |||||||||||||| ||| |||| |||||||||| | ||||||||||    
T  47552263 gggttcgaaccccggacaccctacttattcaccttat-aaggtgaa-ttctagccaccaggctacctgac 47552330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 417
Target Start/End: Original strand, 34948157 - 34948223
Alignment:
Q  349 ggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||| ||||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  34948157 ggttcgaaccccggacaccccacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 34948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 20568302 - 20568239
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagcta 411  Q
    ||||||||||| || |||||   |||||||||||||||||| ||||||||||| ||||| ||||    
T  20568302 gggttcgaaccccgaacaccccacttattcaccttataaaggtgaatttctagtcactacgcta 20568239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 29284154 - 29284234
Alignment:
Q  335 atatgtagggttcggg-ttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctga 416  Q
    |||||||||| ||||| |||||||| ||||||||   ||||||||| ||| |||| ||||||||||||||||| |||||||||    
T  29284154 atatgtagggatcggggttcgaaccccggacaccccacttattcacttta-aaag-tgaatttctagccactaggctacctga 29284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 25020573 - 25020506
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  25020573 gggttcgaaccccggacaccccacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 25020506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 5134478 - 5134412
Alignment:
Q  349 ggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    |||||||||||| ||||||   |||||||||||||| ||| |||| |||||||||||| ||||||||||    
T  5134478 ggttcgaacctcagacaccccacttattcaccttat-aaggtgaa-ttctagccactaggctacctgac 5134412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 843413 - 843346
Alignment:
Q  348 gggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctgac 417  Q
    ||||||||||| ||||||||   |||||||||||||||||  |||| |||||||||||| ||||||||||    
T  843413 gggttcgaaccccggacaccccacttattcaccttataaa-ttgaa-ttctagccactaggctacctgac 843346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 416
Target Start/End: Complemental strand, 38230263 - 38230184
Alignment:
Q  335 atatgtagggttcgggttcgaacctcggacaccttgcttattcaccttataaagatgaatttctagccactaagctacctga 416  Q
    ||||| |||| ||||||| ||| | |||||||||  ||||||||| ||| |||| ||||||||||||||||| |||||||||    
T  38230263 atatgcaggggtcgggtttgaatcccggacacctcacttattcacttta-aaag-tgaatttctagccactatgctacctga 38230184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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