View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_high_141 (Length: 275)

Name: NF13763_high_141
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_high_141
NF13763_high_141
[»] chr1 (22 HSPs)
chr1 (146-263)||(15914686-15914803)
chr1 (17-146)||(8282640-8282769)
chr1 (17-99)||(15914801-15914883)
chr1 (52-162)||(22347920-22348027)
chr1 (63-162)||(12753826-12753925)
chr1 (80-162)||(51471345-51471427)
chr1 (52-161)||(18379388-18379497)
chr1 (17-113)||(10339502-10339597)
chr1 (103-162)||(18389409-18389468)
chr1 (18-113)||(51471434-51471529)
chr1 (52-162)||(16950622-16950732)
chr1 (17-97)||(41330741-41330820)
chr1 (111-161)||(17039021-17039072)
chr1 (68-161)||(11084976-11085070)
chr1 (68-161)||(33063133-33063227)
chr1 (111-162)||(17838229-17838278)
chr1 (68-162)||(45598646-45598741)
chr1 (27-113)||(1626304-1626389)
chr1 (111-145)||(15803479-15803513)
chr1 (63-113)||(20840607-20840657)
chr1 (114-162)||(52436132-52436181)
chr1 (84-137)||(12759298-12759353)
[»] chr4 (32 HSPs)
chr4 (20-161)||(10197541-10197684)
chr4 (18-162)||(10723008-10723149)
chr4 (18-162)||(10936777-10936918)
chr4 (80-161)||(16654590-16654671)
chr4 (25-146)||(10682975-10683093)
chr4 (25-146)||(10896615-10896733)
chr4 (17-159)||(2680455-2680597)
chr4 (18-162)||(31971635-31971779)
chr4 (70-162)||(33746693-33746785)
chr4 (52-159)||(21479154-21479261)
chr4 (84-146)||(18006065-18006127)
chr4 (68-146)||(33744242-33744320)
chr4 (18-123)||(16616667-16616772)
chr4 (52-146)||(10718230-10718320)
chr4 (52-146)||(10931999-10932089)
chr4 (68-162)||(11324584-11324679)
chr4 (59-161)||(15687016-15687119)
chr4 (80-162)||(22555734-22555817)
chr4 (17-108)||(32862365-32862455)
chr4 (18-161)||(49974969-49975111)
chr4 (111-161)||(23542033-23542084)
chr4 (17-108)||(41786154-41786244)
chr4 (108-162)||(41786280-41786332)
chr4 (68-160)||(46738580-46738673)
chr4 (84-159)||(10723308-10723383)
chr4 (84-159)||(10937077-10937152)
chr4 (68-161)||(24143881-24143975)
chr4 (84-162)||(33744497-33744575)
chr4 (84-146)||(10683257-10683321)
chr4 (84-146)||(10896897-10896961)
chr4 (52-113)||(16654678-16654739)
chr4 (111-159)||(19894132-19894181)
[»] chr7 (39 HSPs)
chr7 (51-161)||(19295505-19295615)
chr7 (50-161)||(19353868-19353979)
chr7 (18-162)||(4793892-4794036)
chr7 (52-146)||(24814848-24814942)
chr7 (22-139)||(26193657-26193774)
chr7 (60-162)||(9567653-9567755)
chr7 (66-143)||(14688081-14688158)
chr7 (65-162)||(23174046-23174143)
chr7 (17-113)||(21261151-21261246)
chr7 (98-161)||(15711762-15711825)
chr7 (17-113)||(10038073-10038168)
chr7 (17-113)||(23082119-23082214)
chr7 (52-138)||(10252128-10252214)
chr7 (17-146)||(6046040-6046170)
chr7 (83-162)||(23297312-23297392)
chr7 (63-162)||(23579259-23579359)
chr7 (83-162)||(30226831-30226911)
chr7 (111-161)||(11629417-11629468)
chr7 (68-162)||(12560530-12560625)
chr7 (63-113)||(20992309-20992359)
chr7 (63-113)||(26132298-26132348)
chr7 (60-132)||(4541988-4542060)
chr7 (115-162)||(14976225-14976273)
chr7 (115-162)||(15405701-15405749)
chr7 (17-113)||(23960746-23960841)
chr7 (57-96)||(15709121-15709160)
chr7 (102-155)||(7620863-7620917)
chr7 (84-162)||(10661932-10662010)
chr7 (63-113)||(16207224-16207274)
chr7 (112-161)||(48796938-48796988)
chr7 (113-162)||(2077305-2077354)
chr7 (59-108)||(23297248-23297297)
chr7 (63-108)||(24902872-24902916)
chr7 (84-161)||(24902936-24903013)
chr7 (117-162)||(31268395-31268440)
chr7 (113-161)||(2083724-2083772)
chr7 (18-114)||(10661584-10661679)
chr7 (87-162)||(11559819-11559895)
chr7 (64-108)||(12326579-12326623)
[»] chr6 (31 HSPs)
chr6 (17-161)||(18152054-18152198)
chr6 (52-162)||(21316889-21316997)
chr6 (18-146)||(28622919-28623047)
chr6 (18-162)||(28624532-28624676)
chr6 (52-162)||(34639503-34639610)
chr6 (63-162)||(24542420-24542519)
chr6 (18-162)||(16308664-16308809)
chr6 (18-142)||(20559317-20559438)
chr6 (18-146)||(17868233-17868362)
chr6 (18-146)||(17878016-17878145)
chr6 (17-108)||(26964901-26964991)
chr6 (68-163)||(16136895-16136991)
chr6 (57-113)||(19598441-19598497)
chr6 (87-162)||(20764256-20764332)
chr6 (57-113)||(23882041-23882097)
chr6 (22-113)||(30425607-30425698)
chr6 (84-161)||(12444063-12444141)
chr6 (63-113)||(19077909-19077959)
chr6 (63-113)||(25970443-25970493)
chr6 (63-113)||(25974883-25974933)
chr6 (83-162)||(9385377-9385457)
chr6 (111-161)||(20003874-20003925)
chr6 (17-108)||(24564435-24564525)
chr6 (63-113)||(12385201-12385251)
chr6 (68-161)||(15002477-15002571)
chr6 (63-108)||(13196090-13196135)
chr6 (63-108)||(19894016-19894061)
chr6 (84-161)||(24564545-24564622)
chr6 (116-161)||(30425732-30425777)
chr6 (63-108)||(33666557-33666602)
chr6 (57-101)||(15930203-15930247)
[»] chr5 (21 HSPs)
chr5 (21-161)||(24118265-24118405)
chr5 (18-163)||(22183611-22183756)
chr5 (50-161)||(17660759-17660870)
chr5 (61-161)||(20127703-20127803)
chr5 (18-162)||(20740277-20740421)
chr5 (17-113)||(25674425-25674522)
chr5 (68-162)||(17920104-17920199)
chr5 (68-162)||(34404749-34404844)
chr5 (84-146)||(20714007-20714071)
chr5 (113-164)||(26182548-26182600)
chr5 (108-148)||(26328478-26328518)
chr5 (111-161)||(7897233-7897284)
chr5 (80-162)||(20497467-20497550)
chr5 (63-113)||(13941358-13941408)
chr5 (63-113)||(18221876-18221926)
chr5 (63-113)||(23624607-23624657)
chr5 (63-113)||(30605034-30605084)
chr5 (113-162)||(11205525-11205574)
chr5 (64-113)||(22082034-22082083)
chr5 (111-159)||(22130201-22130249)
chr5 (115-162)||(26037642-26037687)
[»] chr3 (23 HSPs)
chr3 (18-160)||(18477815-18477954)
chr3 (22-161)||(8225808-8225944)
chr3 (65-161)||(214390-214486)
chr3 (63-162)||(17042054-17042153)
chr3 (52-162)||(31650439-31650549)
chr3 (18-162)||(11657020-11657161)
chr3 (52-146)||(25020151-25020245)
chr3 (52-161)||(15674133-15674242)
chr3 (18-162)||(13920224-13920368)
chr3 (52-162)||(3444348-3444457)
chr3 (61-162)||(7495242-7495343)
chr3 (18-113)||(979724-979818)
chr3 (83-162)||(7478479-7478558)
chr3 (57-137)||(21253314-21253396)
chr3 (96-161)||(14406000-14406065)
chr3 (18-162)||(13914499-13914643)
chr3 (68-162)||(8749787-8749882)
chr3 (26-113)||(3551822-3551908)
chr3 (84-162)||(6578571-6578649)
chr3 (65-113)||(6578892-6578940)
chr3 (111-162)||(6578797-6578848)
chr3 (111-161)||(9030738-9030789)
chr3 (65-113)||(18482716-18482764)
[»] chr2 (15 HSPs)
chr2 (28-156)||(27111763-27111891)
chr2 (18-138)||(31588201-31588321)
chr2 (28-162)||(27108174-27108308)
chr2 (18-162)||(36397787-36397928)
chr2 (17-152)||(19197637-19197772)
chr2 (52-146)||(24311163-24311257)
chr2 (18-160)||(24312941-24313083)
chr2 (84-146)||(20645604-20645666)
chr2 (52-162)||(25347897-25348007)
chr2 (80-161)||(13314282-13314364)
chr2 (68-161)||(18766426-18766520)
chr2 (17-113)||(21249541-21249636)
chr2 (111-161)||(18605913-18605964)
chr2 (111-161)||(20068793-20068844)
chr2 (53-96)||(26859350-26859393)
[»] scaffold0064 (2 HSPs)
scaffold0064 (52-162)||(52236-52346)
scaffold0064 (52-161)||(45263-45372)
[»] scaffold0520 (2 HSPs)
scaffold0520 (52-159)||(5722-5829)
scaffold0520 (52-129)||(11977-12054)
[»] scaffold0034 (1 HSPs)
scaffold0034 (18-162)||(50204-50348)
[»] scaffold0008 (3 HSPs)
scaffold0008 (18-162)||(36275-36422)
scaffold0008 (18-161)||(41333-41478)
scaffold0008 (84-162)||(36572-36650)
[»] scaffold0480 (1 HSPs)
scaffold0480 (16-162)||(11899-12045)
[»] chr8 (22 HSPs)
chr8 (60-159)||(12376190-12376289)
chr8 (83-149)||(12813878-12813944)
chr8 (18-162)||(1684676-1684820)
chr8 (52-128)||(23863622-23863698)
chr8 (17-107)||(20254226-20254315)
chr8 (57-113)||(18622421-18622477)
chr8 (101-160)||(23867572-23867631)
chr8 (68-161)||(17880055-17880149)
chr8 (84-146)||(24849475-24849537)
chr8 (84-146)||(9997555-9997619)
chr8 (111-159)||(17280678-17280727)
chr8 (103-163)||(12240949-12241009)
chr8 (18-98)||(12813969-12814049)
chr8 (111-162)||(39081697-39081749)
chr8 (64-108)||(45136877-45136921)
chr8 (63-162)||(23250483-23250582)
chr8 (65-108)||(26537055-26537098)
chr8 (63-113)||(27924796-27924846)
chr8 (111-159)||(8730721-8730770)
chr8 (68-161)||(33465478-33465571)
chr8 (118-162)||(9997363-9997407)
chr8 (65-113)||(33977827-33977875)
[»] scaffold0423 (1 HSPs)
scaffold0423 (84-162)||(14348-14426)
[»] scaffold0505 (1 HSPs)
scaffold0505 (84-162)||(9294-9373)
[»] scaffold0022 (1 HSPs)
scaffold0022 (111-162)||(3911-3963)
[»] scaffold1001 (2 HSPs)
scaffold1001 (63-113)||(728-778)
scaffold1001 (111-162)||(822-873)
[»] scaffold0226 (2 HSPs)
scaffold0226 (63-113)||(17468-17518)
scaffold0226 (63-113)||(26862-26912)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-114)||(38026-38122)
[»] scaffold0328 (1 HSPs)
scaffold0328 (111-159)||(16290-16339)
[»] scaffold0129 (1 HSPs)
scaffold0129 (63-108)||(16271-16316)
[»] scaffold0088 (1 HSPs)
scaffold0088 (63-95)||(37356-37388)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 15914803 - 15914686
Alignment:
Q  146 atacaaatatccaacaacaaggttgcatatgctattgttggcggtgcttggaatgtctcggttgcactgtggggaactcagggagtgtcatcactattgg 245  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  15914803 atacaaatatccaacaacaaggttgcagatgctattgttggcggtgcttggaatgtctcgatcgcactgtggggaactccgggagtgtcatcactattgg 15914704  T
Q  246 aatctatgactttaccta 263  Q
    ||||||||||||||||||    
T  15914703 aatctatgactttaccta 15914686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 8282640 - 8282769
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatga 116  Q
    ||||||| ||||||||||||| | ||| ||| ||||||||||||| ||| |||||||| |||||| |||||||||||||| |||| ||||||||||||||    
T  8282640 attccttgataagataaagcgcgggtaaaacaaggcacataaacaaggctcactgaactgtgtcaggatgttggaacatcgtatccaacatcatacatga 8282739  T
Q  117 atatttgttttagcaataatgaagccaata 146  Q
     ||||||||||||||| ||||| |||||||    
T  8282740 gtatttgttttagcaacaatgaggccaata 8282769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 15914883 - 15914801
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcata 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||    
T  15914883 attccttaataagataaagcgtgtgtacaactagacacataaacaaggcacactgaaccgtgtcaagatgttgcaacatcata 15914801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 22348027 - 22347920
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| ||||   || ||||||||| ||||||||||||||| |||||||||||||  |||    
T  22348027 cacataaacagggcacactgaaccgtgccaagatgttagaacatcgtatc---caacatacatgagtatttgttttagcaacaatgaagccaatacccaa 22347931  T
Q  152 atatccaacaa 162  Q
    ||| |||||||    
T  22347930 atacccaacaa 22347920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 12753826 - 12753925
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||||| || |||||||||||||| |||| ||||||||| |||| ||||||||||||||| ||||||||||| |  |||||| |||||||    
T  12753826 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcatatatgagtatttgttttagcaacaatgaagccaacactcaaatacccaacaa 12753925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 51471427 - 51471345
Alignment:
Q  80 caagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||| |||| |||||| |||||  |||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  51471427 caagatgttgaaacaacatatccaacatggtacatgaacatttgttttagcaataatgaagtcaatacacaaatatccaacaa 51471345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 18379497 - 18379388
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    ||||||| ||||||||||||||||||  | | |||||| |||||| |||| |||||| | ||||||||||| ||||| ||||||||| ||||| | ||||    
T  18379497 cacataatcagggcacactgaaccgtacccacatgttgaaacatcgtatccaacatcttgcatgaatattttttttaacaataatgaggccaacacacaa 18379398  T
Q  152 atatccaaca 161  Q
    ||| ||||||    
T  18379397 atacccaaca 18379388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 10339597 - 10339502
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||| ||||||||| | ||||||||  || || | ||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||    
T  10339597 attccttaaaaagataaagtgcgcgtacaatcagacata-aaacaaggcacactgaaccgtgtcaagatgttggaacatcgtatccaacatcttaca 10339502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 162
Target Start/End: Complemental strand, 18389468 - 18389409
Alignment:
Q  103 aacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18389468 aacatcttgcatgaatatttgttttagcaataatgaggccaatacacaaatatccaacaa 18389409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 51471529 - 51471434
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||||||| | | | | | || |||| |||||||||||||||||||||| || ||||||||||| ||||||| |||||| ||||    
T  51471529 ttccttaataagataaagcgcgtgaaaatcaagccacacaaacagggcacactgaaccgtgccaggatgttggaacttcatatccaacatcgtaca 51471434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 16950622 - 16950732
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    ||||||| ||||||| || |||| ||  ||| |||||| |||||  | || |||||| | | ||||||||||||||| ||||||||| ||||||||||||    
T  16950622 cacataatcagggcatacagaactgtaccaacatgttgaaacattttgtccaacatcttgcttgaatatttgttttaacaataatgaggccaatatacaa 16950721  T
Q  152 atatccaacaa 162  Q
    |||||||||||    
T  16950722 atatccaacaa 16950732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 41330820 - 41330741
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatca 97  Q
    ||||||||||||||||||||| ||||||||  ||||| | ||||| ||||||||||||||||  | |||||||||||||||    
T  41330820 attccttaataagataaagcgcgcgtacaatcaggcata-aaacaaggcacactgaaccgtgataggatgttggaacatca 41330741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 17039021 - 17039072
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  17039021 acatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 17039072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 11085070 - 11084976
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| || || |||||||| ||||| | |  ||||||  ||||||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  11085070 actgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatataaatatccaaca 11084976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 33063133 - 33063227
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| || || |||||||| ||||| | |  ||||||  ||||||||||||||||||| ||| | |||||| |||||||||||||||||||    
T  33063133 actgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttagacaaaagtgaagctaatatacaaatatccaaca 33063227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 17838278 - 17838229
Alignment:
Q  111 acatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||||||||||||||| |||||  ||||||||| |||||||    
T  17838278 acatgaatatttgttttagcaataatgcagcca--atacaaatacccaacaa 17838229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 45598741 - 45598646
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagc-aataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| || || |||||||| ||||| | |  ||||||  |||| ||||||||||||||| || |||||||| ||||| ||||||||||||||    
T  45598741 actgaaccatgccaggatgttggcacatcgtgttcaacatctcacataaatatttgttttagccaaaaatgaagctaatattcaaatatccaacaa 45598646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 1626304 - 1626389
Alignment:
Q  27 aagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||| |||||||| ||||||   || |||| |||||||||| ||  || ||||||||||||||||||| |||||| ||||    
T  1626304 aagataaagcgcgcgtacaagtaggcatgaaaccagg-cacactgaactgttccaggatgttggaacatcatatccaacatcttaca 1626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 15803513 - 15803479
Alignment:
Q  111 acatgaatatttgttttagcaataatgaagccaat 145  Q
    ||||||||||||||||||||||||||| |||||||    
T  15803513 acatgaatatttgttttagcaataatgcagccaat 15803479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 20840657 - 20840607
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||| |||||| |||||||||||||| |||| |||||| ||||    
T  20840657 ggcacactgaactgtgtcaggatgttggaacatcgtatccaacatcttaca 20840607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 52436181 - 52436132
Alignment:
Q  114 tgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||||    
T  52436181 tgaatatttgttttaggcaaaaacaaagccaatatacaaatatccaacaa 52436132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 12759298 - 12759353
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatg 137  Q
    |||||||||||| ||||| ||||||| |  |||| |||||||||||||||||||||    
T  12759298 atgttggaacataatatccaacatcacaaacatggatatttgttttagcaataatg 12759353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 10197684 - 10197541
Alignment:
Q  20 ccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaata 119  Q
    |||||||||||||||| ||||||| | ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  10197684 ccttaataagataaagtgtgcgtatagctaggcaaataaacatggcacactgaaccgtgccaagatgttggaacatcatatccaacatcataaatgaata 10197585  T
Q  120 tttgttttagcaataat--gaagccaatatacaaatatccaaca 161  Q
    |||||||||||||||||  |||| ||||| ||||||||||||||    
T  10197584 tttgttttagcaataatgagaagtcaatacacaaatatccaaca 10197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 10723008 - 10723149
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||||||||||  |||||| | | || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||   || |||||||||     
T  10723008 ttccttaataagataaagattgcgtaaaccaagccacataaacagggaacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgac 10723104  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| |||||| |||||||||||||   |||||||||||||    
T  10723105 tatttgttctagcaacaatgaagccaatactgaaatatccaacaa 10723149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 10936777 - 10936918
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||||||||||  |||||| | | || ||||||||||||| ||||||||||||| ||||||||||||||||| ||||   || |||||||||     
T  10936777 ttccttaataagataaagattgcgtaaaccaagccacataaacagggaacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgac 10936873  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| |||||| |||||||||||||   |||||||||||||    
T  10936874 tatttgttctagcaacaatgaagccaatactgaaatatccaacaa 10936918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 16654671 - 16654590
Alignment:
Q  80 caagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16654671 caagatgttggaacaacatatccaacatcgtacatgaatatttgttttagcaataatgaagccaatacacaaatatccaaca 16654590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 10682975 - 10683093
Alignment:
Q  25 ataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgt 124  Q
    |||||||||||  |||||| | | || ||||||||||||||||||||||||||| ||||||||||||||||| ||||   || ||||||||| |||||||    
T  10682975 ataagataaagattgcgtaaatcaagccacataaacagggcacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgagtatttgt 10683071  T
Q  125 tttagcaataatgaagccaata 146  Q
    |||||||| |||||||||||||    
T  10683072 tttagcaacaatgaagccaata 10683093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 10896615 - 10896733
Alignment:
Q  25 ataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgt 124  Q
    |||||||||||  |||||| | | || ||||||||||||||||||||||||||| ||||||||||||||||| ||||   || ||||||||| |||||||    
T  10896615 ataagataaagattgcgtaaatcaagccacataaacagggcacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgagtatttgt 10896711  T
Q  125 tttagcaataatgaagccaata 146  Q
    |||||||| |||||||||||||    
T  10896712 tttagcaacaatgaagccaata 10896733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 2680455 - 2680597
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatga 116  Q
    |||||||||  |||||||||||||||  |||| | ||||| | || |||||||||||||||  ||| |||||| |||||   ||| |||||| ||| |||    
T  2680455 attccttaaatagataaagcgtgcgttaaacttgacacatgatcaaggcacactgaaccgtaccaacatgttgaaacatttgatccaacatcttacttga 2680554  T
Q  117 atatttgttttagcaataatgaagccaatatacaaatatccaa 159  Q
    |||||||||||||||| ||||| | ||||||||||||||||||    
T  2680555 atatttgttttagcaacaatgaggtcaatatacaaatatccaa 2680597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 31971635 - 31971779
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| |||||||||||||| || | || ||||||    ||||||||||||||| |||  | |||||||||||||| |||  ||||||| |||||||    
T  31971635 ttccttaaaaagataaagcgtgcataaatcttggcacaacttcagggcacactgaactgtgctaggatgttggaacatcgtatacaacatcacacatgaa 31971734  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||| ||||||||| | ||||| ||| | |||||||||||||||    
T  31971735 tatttattttagcaaaagtgaagtcaacacacaaatatccaacaa 31971779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 33746693 - 33746785
Alignment:
Q  70 tgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||| | || |||||| ||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||  |||||| |||||||    
T  33746693 tgaaccgcgccaggatgttagaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaatactcaaatacccaacaa 33746785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 21479154 - 21479261
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    ||||||| |||| |||| ||||  ||| ||||||||||||||||| |||| ||||| |||||||| ||||||||||| ||| |||||||||||||  |||    
T  21479154 cacataagcaggacacattgaattgtgccaagatgttggaacatcctatccaacattatacatgagtatttgttttaacaacaatgaagccaatactcaa 21479253  T
Q  152 atatccaa 159  Q
    ||| ||||    
T  21479254 atacccaa 21479261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 18006127 - 18006065
Alignment:
Q  84 atgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  18006127 atgttggaacatcgtatccaacatcatgcatgaatatttgttttagaaataatgaagccaata 18006065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 33744242 - 33744320
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    |||||||||||  | |||||||||||||| |||| |||||||||||||| ||||||||||||||| ||| |||||||||    
T  33744242 actgaaccgtgctaggatgttggaacatcttatccaacatcatacatgagtatttgttttagcaacaattaagccaata 33744320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 16616667 - 16616772
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||||||||||||||| | | | | | || |||| |||||||||||||||||| ||| |||||| ||||||||||  ||| ||||||||||||||     
T  16616667 ttccttaataagataaagcgcgtgaaaaccaagccacacaaacagggcacactgaactgtgccaagatattggaacatcgaatccaacatcatacatgag 16616766  T
Q  118 tatttg 123  Q
    ||||||    
T  16616767 tatttg 16616772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 10718230 - 10718320
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||   || ||||||||| |||||| ||||| || |||||||||||||    
T  10718230 cacataaacagggcacactgaaccgtgccaggatgttggaacatcgtatc---caacatacatgagtatttg-tttagaaacaatgaagccaata 10718320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 10931999 - 10932089
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||   || ||||||||| |||||| ||||| || |||||||||||||    
T  10931999 cacataaacagggcacactgaaccgtgccaggatgttggaacatcgtatc---caacatacatgagtatttg-tttagaaacaatgaagccaata 10932089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 11324679 - 11324584
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| || ||||||||||| ||||| | |  ||||||  ||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  11324679 actgaaccatgccaagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 11324584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 15687119 - 15687016
Alignment:
Q  59 acagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgtttta-gcaataatgaagccaatatacaaatatcc 157  Q
    |||||||| || ||||| || || |||||||||||||| | |  ||||||| || ||||||||||||||| |||| | ||||||||| ||||||||||||    
T  15687119 acagggcataccgaaccatgccaggatgttggaacatcgtgtacaacatcacacttgaatatttgttttaggcaaaagtgaagccaacatacaaatatcc 15687020  T
Q  158 aaca 161  Q
    ||||    
T  15687019 aaca 15687016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 22555734 - 22555817
Alignment:
Q  80 caagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||| ||||| | |  ||||||  ||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  22555734 caagatgttggcacatcttgtacaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 22555817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 32862365 - 32862455
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    ||||||||||| ||||||||| ||||||| | | ||| | ||| | ||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  32862365 attccttaatatgataaagcgcgcgtacatcaatgcata-aaataaggcacactgaaccgtatcaggatgttggaacatcatatccaacatc 32862455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 49974969 - 49975111
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| ||||||||||  | ||| | | || |||||||||||||||||||||| |||| || |||||||||||||| |||| |||||  |||| ||     
T  49974969 ttccttaaaaagataaagctcgtgtaaaccaagccacataaacagggcacactgaatcgtgccaggatgttggaacatcgtatccaacattgtacaagag 49975068  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    || ||||||||| || ||||| | |||||  |||||| ||||||    
T  49975069 ta-ttgttttagaaacaatgaggtcaatactcaaatacccaaca 49975111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 23542033 - 23542084
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  23542033 acatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 23542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 41786154 - 41786244
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    ||||||||||||||||||||| |||||   | ||||| | ||||| | || ||||||||||| || ||||||||||||||||||| ||||||    
T  41786154 attccttaataagataaagcgcgcgtagtgcaaggcata-aaacaagacatactgaaccgtgccaggatgttggaacatcatatccaacatc 41786244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 41786280 - 41786332
Alignment:
Q  108 catacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| ||||||||||||||||||||| |||||  |||||||||||||||||    
T  41786280 catacatggatatttgttttagcaataatgcagcca--atacaaatatccaacaa 41786332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 46738673 - 46738580
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgtttta-gcaataatgaagccaatatacaaatatccaac 160  Q
    |||||||| ||||| |||||||| ||||| | |  ||||||  |||||||||||||||||| | || | ||||| |||||||||||||||||||    
T  46738673 actgaaccatgtcaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggtaaaagtgaagacaatatacaaatatccaac 46738580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 10723308 - 10723383
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaa 159  Q
    ||||||||||||  |||| ||||||| |  |||| ||||||||||||||||||||| |||||  ||||||||||||||    
T  10723308 atgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgtagcca--atacaaatatccaa 10723383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 10937077 - 10937152
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaa 159  Q
    ||||||||||||  |||| ||||||| |  |||| ||||||||||||||||||||| |||||  ||||||||||||||    
T  10937077 atgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgtagcca--atacaaatatccaa 10937152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 24143881 - 24143975
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| || || |||||||| ||||| | |  ||||||  | ||||||||||||||||| ||| | ||||| ||||||||||||||||||||    
T  24143881 actgaaccatgccaggatgttggcacatcgtgttcaacatctcatatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaaca 24143975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 33744497 - 33744575
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||| ||||| ||||||| |  |||  ||||||||||||||||||||| |||||  ||||||||| |||||||    
T  33744497 atgttggaacataatatccaacatcacaaacatatatatttgttttagcaataatgcagcca--atacaaatacccaacaa 33744575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 10683257 - 10683321
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||  |||| ||||||| |  |||| ||||||||||||||||||||| ||||||||    
T  10683257 atgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagccaata 10683321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 10896897 - 10896961
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||  |||| ||||||| |  |||| ||||||||||||||||||||| ||||||||    
T  10896897 atgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagccaata 10896961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 16654739 - 16654678
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||| ||||||||||||||||||  || || ||||||| ||||||||||| |||||| ||||    
T  16654739 cacacaaacagggcacactgaactatgccaggatgttgaaacatcatatccaacatcgtaca 16654678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 19894181 - 19894132
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaa 159  Q
    ||||||||||||||||||| ||| | ||||||||||||||||| ||||||    
T  19894181 acatgaatatttgttttaggcaaaagtgaagccaatatacaaaaatccaa 19894132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 19295505 - 19295615
Alignment:
Q  51 gcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatataca 150  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| | |||    
T  19295505 gcacataaacaggacacactgaaccgtgccaagatgttggaacatcgtatccaacatcatacatgagtatttgttttagcaataatgaagccaacacaca 19295604  T
Q  151 aatatccaaca 161  Q
    |||||||||||    
T  19295605 aatatccaaca 19295615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 19353868 - 19353979
Alignment:
Q  50 ggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatac 149  Q
    |||||||||| |||||||||||||||||| ||| ||||||||||||| |||| || ||||| |||||||||||||||||||| |||||||||||||||||    
T  19353868 ggcacataaaaagggcacactgaaccgtgccaacatgttggaacatcgtatccaatatcatgcatgaatatttgttttagcagtaatgaagccaatatac 19353967  T
Q  150 aaatatccaaca 161  Q
    ||||||||||||    
T  19353968 aaatatccaaca 19353979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 4794036 - 4793892
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| |||||||||||||| || | || ||||||    ||||||||||||||  |||  | |||||||||||||| |||| ||||||| |||||||    
T  4794036 ttccttaaaaagataaagcgtgcataaatcttggcacaacttcagggcacactgaaatgtgctacgatgttggaacatcgtatccaacatcacacatgaa 4793937  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| | ||||||||| | |||||||||||||||    
T  4793936 tatttgttttagcaaaagtgaagccaacacacaaatatccaacaa 4793892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 24814848 - 24814942
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    |||| ||||||||||||||||| |||| |||||||||| | |||| |||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  24814848 cacacaaacagggcacactgaatcgtgccaagatgttgaagcatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaata 24814942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 26193774 - 26193657
Alignment:
Q  22 ttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatt 121  Q
    ||||||||||||| | |||||| | | || ||||||||||| |||| || |||| || ||||||||||||||||| |||| |||||||||||||| ||||    
T  26193774 ttaataagataaaacttgcgtaaaccaagccacataaacagagcacgctaaaccatgccaagatgttggaacatcgtatccaacatcatacatgagtatt 26193675  T
Q  122 tgttttagcaataatgaa 139  Q
    ||||||||||| ||||||    
T  26193674 tgttttagcaacaatgaa 26193657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 9567653 - 9567755
Alignment:
Q  60 cagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaa 159  Q
    ||||||||||||||| |||  | |||||||||||||| |||| ||||||| |||||||||||||||||||||| | ||| ||||| | ||||||||||||    
T  9567653 cagggcacactgaactgtgctaggatgttggaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtgaggccaacacacaaatatccaa 9567752  T
Q  160 caa 162  Q
    |||    
T  9567753 caa 9567755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 14688081 - 14688158
Alignment:
Q  66 acactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagcca 143  Q
    ||||||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||    
T  14688081 acactgaaccgtgccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagcaataataaagcca 14688158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 23174143 - 23174046
Alignment:
Q  65 cacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||| ||||||||||||| ||||||  |||| |||||||||||||| ||||||||||| ||| ||||||| |||||  |||||| |||||||    
T  23174143 cacactgaactgtgtcaagatgttagaacattgtatccaacatcatacatgagtatttgttttaccaacaatgaagtcaataatcaaatacccaacaa 23174046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 21261151 - 21261246
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||||||| ||||||||  | ||| | ||||| |||||||||||||||| || ||||||||||||||||||| |||||| ||||    
T  21261151 attccttaataagataaagcgcgcgtacaatcaagcata-aaacaaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttaca 21261246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 15711762 - 15711825
Alignment:
Q  98 tatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  15711762 tatccaacatcaaacatgaatatttgttttagcaataatgaagccaatacacaaatacccaaca 15711825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 10038168 - 10038073
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||||||||||||||||  ||||| | ||||| ||||||||||||| || ||  |||||||||||| ||||| |||||| ||||    
T  10038168 attccttaataagataaagcgtgcgtacaatcaggcata-aaacaaggcacactgaaccatgccagtatgttggaacattatatccaacatcttaca 10038073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 23082214 - 23082119
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||||||| ||||| ||  ||||| | ||| | |||||||||||||||| || ||||||||||||||||||| |||||| ||||    
T  23082214 attccttaataagataaagcgcgcgtataatcaggcata-aaataaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttaca 23082119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 10252128 - 10252214
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatga 138  Q
    ||||||||||||  ||||||||||||  || ||| |||||||||| |||| |||||||||||||||||||| ||||| ||| |||||    
T  10252128 cacataaacaggatacactgaaccgtaccatgatattggaacatcgtatccaacatcatacatgaatatttattttatcaacaatga 10252214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 6046040 - 6046170
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcata--cat 114  Q
    |||||||||||||||||||||  |||| ||  ||||| | ||||| |||||  |||| ||||||| |||||||||||||   ||| |||||||||  |||    
T  6046040 attccttaataagataaagcgcacgtataataaggcata-aaacaaggcacgttgaatcgtgtcaggatgttggaacatatgatccaacatcataatcat 6046138  T
Q  115 gaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||| |||||| || ||||||||    
T  6046139 gaatatttgttttcgcaatagtgcagccaata 6046170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 23297312 - 23297392
Alignment:
Q  83 gatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatata-caaatatccaacaa 162  Q
    |||||||||||| |||||  ||||||| ||  || ||||||||||||||||||||||||||||||| |||||| |||||||    
T  23297312 gatgttggaacaacatatgcaacatcaaactagagtatttgttttagcaataatgaagccaatataccaaatacccaacaa 23297392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 23579359 - 23579259
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatata-caaatatccaaca 161  Q
    |||||||||||||  |||| |||||||||||| ||| || ||||||  | | |||||||| |||||||||||||||| |||||| | |||||| ||||||    
T  23579359 ggcacactgaacctcgtcaggatgttggaacaacatttccaacatctaataagaatatttattttagcaataatgaatccaatacatcaaatacccaaca 23579260  T
Q  162 a 162  Q
    |    
T  23579259 a 23579259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 30226831 - 30226911
Alignment:
Q  83 gatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| ||||| | || ||||||   |||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  30226831 gatgttggcacatcgtgtccaacatctcccatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 30226911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 11629417 - 11629468
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  11629417 acatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 11629468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 12560625 - 12560530
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| || || |||||||| ||||| | |  ||||||  ||||||||||||||||||| ||| | ||||| |||||||||||||||||||||    
T  12560625 actgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaacaa 12560530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 20992309 - 20992359
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| || ||||||||||||||||||| |||||| ||||    
T  20992309 ggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttaca 20992359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 26132348 - 26132298
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| || ||||||||||||||||||| |||||| ||||    
T  26132348 ggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttaca 26132298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 4542060 - 4541988
Alignment:
Q  60 cagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaa 132  Q
    |||| ||||||||||| || || |||||||||||||  | || ||||||| || |||||||||||||||||||    
T  4542060 caggacacactgaaccatgccaggatgttggaacatggtgtccaacatcacacttgaatatttgttttagcaa 4541988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 14976225 - 14976273
Alignment:
Q  115 gaatatttgttttagcaataa-tgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||    
T  14976225 gaatatttgttttaggaaaaagtgaagccaatatacaaatatccaacaa 14976273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 15405701 - 15405749
Alignment:
Q  115 gaatatttgttttagcaataa-tgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||    
T  15405701 gaatatttgttttaggaaaaagtgaagccaatatacaaatatccaacaa 15405749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 23960746 - 23960841
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||| ||||| || ||||||||  ||||| | ||| | ||||||||||| |||| || |||||||||||||| |||| |||||| ||||    
T  23960746 attccttaataaaataaaacgcgcgtacaatcaggcata-aaataaggcacactgaatcgtgccaggatgttggaacatcgtatccaacatcttaca 23960841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 15709121 - 15709160
Alignment:
Q  57 aaacagggcacactgaaccgtgtcaagatgttggaacatc 96  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  15709121 aaacagggcacactgaaccgtgccaggatgttggaacatc 15709160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 7620863 - 7620917
Alignment:
Q  102 taacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatat 155  Q
    |||||||  |||||||||||| |||||| ||| ||||||||||||||||||||||    
T  7620863 taacatctcacatgaatatttattttaggcaaaaatgaagccaatatacaaatat 7620917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 10661932 - 10662010
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||  |||| ||||||| |  |||| ||||||||||||||||||||| |||||  ||||||||| |||||||    
T  10661932 atgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagcca--atacaaatacccaacaa 10662010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 16207274 - 16207224
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||| || || ||||||||||||||||||| |||||| ||||    
T  16207274 ggcacactgaaccatgccaggatgttggaacatcatatccaacatcttaca 16207224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 48796988 - 48796938
Alignment:
Q  112 catgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||| |||||| ||| | ||||||||||||||||||||||||||    
T  48796988 catgaatatttattttaggcaaaagtgaagccaatatacaaatatccaaca 48796938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 2077305 - 2077354
Alignment:
Q  113 atgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||||||  | || |||||||| |||||||||||||||||    
T  2077305 atgaatatttgttttaggcaaaaagaagccaacatacaaatatccaacaa 2077354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 23297248 - 23297297
Alignment:
Q  59 acagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    ||||| |||||||||||||| |||||||||| |||||||| || ||||||    
T  23297248 acaggacacactgaaccgtgccaagatgttgaaacatcatttccaacatc 23297297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 24902872 - 24902916
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    |||||||||||||||| || ||||||||||||||||||| ||||||    
T  24902872 ggcacactgaaccgtg-caggatgttggaacatcatatccaacatc 24902916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 24902936 - 24903013
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||  |||| ||||||| |  |||| |||||||||||| |||||||| |||||  ||||||||||||||||    
T  24902936 atgttggaacatagtatccaacatcacaaacatggatatttgttttaccaataatgcagcca--atacaaatatccaaca 24903013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 31268440 - 31268395
Alignment:
Q  117 atatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||| ||||||||| ||||| | |||||||||||||||    
T  31268440 atatttgttttaacaataatgaggccaaaacacaaatatccaacaa 31268395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 2083724 - 2083772
Alignment:
Q  113 atgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |||||||||||||||||  | || |||||||| ||||||||||||||||    
T  2083724 atgaatatttgttttaggcaaaaagaagccaacatacaaatatccaaca 2083772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 10661584 - 10661679
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacat 114  Q
    ||||||||||||| ||  || |||||||| ||||||   || |||| ||||||||||||||  | |||||||||||||| |||| |||||| |||||    
T  10661584 ttccttaataagaaaagacgcgcgtacaaataggcatgaaatcagg-cacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacat 10661679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 11559895 - 11559819
Alignment:
Q  87 ttggaacatcatatctaacatcatacatgaatatttgtttta-gcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||| | || ||||||  || ||||||||||||||| |||| ||||| ||||| || ||||||||||||||    
T  11559895 ttggaacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaatgaggccaacattcaaatatccaacaa 11559819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 12326579 - 12326623
Alignment:
Q  64 gcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    ||||||||||||||| || |||||||||||||| |||| ||||||    
T  12326579 gcacactgaaccgtgccaggatgttggaacatcgtatccaacatc 12326623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 18152198 - 18152054
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatga 116  Q
    |||||||||  |||||||||| ||||| | || ||||||||||||||||||||||||||||| ||| ||||| ||||||| |||| |||||||| |||||    
T  18152198 attccttaaatagataaagcgcgcgtaaatcttggcacataaacagggcacactgaaccgtgccaacatgttagaacatcgtatccaacatcatgcatga 18152099  T
Q  117 atatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||||    
T  18152098 atatttattttagaaataaggaagccaatatacaaatatctaaca 18152054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 21316997 - 21316889
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    |||| ||||||||||||||||||  || || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||||||    
T  21316997 cacacaaacagggcacactgaactatgccaggatgttggaacatcatatccaacatcatacaagaatatttgttttagcaataatgaagcca--atacaa 21316900  T
Q  152 atatccaacaa 162  Q
    ||| |||||||    
T  21316899 atacccaacaa 21316889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 28623047 - 28622919
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||| ||||||  ||| || | | || ||||||||||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||||     
T  28623047 ttccttaataaaataaagattgcataaaccaagccacataaacagggcacactgaaccgtgccaagatgttagaacataatatccagcatcatacatgag 28622948  T
Q  118 tatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||||| ||||||| |||||    
T  28622947 tatttgttttagcaacaatgaagtcaata 28622919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 28624532 - 28624676
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||| ||||||  |||||| | | ||  ||||||||||| |||||||||||||| |||||||||| ||| || |||| ||||||||||||||     
T  28624532 ttccttaataaaataaagattgcgtaaaccaagcaacataaacaggacacactgaaccgtgccaagatgttgaaacgtcgtatccaacatcatacatgag 28624631  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| ||||||| || ||  ||||||||||||||    
T  28624632 tatttgttttagcaacaatgaagtcattactcaaatatccaacaa 28624676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 34639610 - 34639503
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||||   || ||||||||| ||||||||||||||| ||| |||||||||| |||    
T  34639610 cacataaacaaggcacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgagtatttgttttagcaacaataaagccaatatccaa 34639514  T
Q  152 atatccaacaa 162  Q
    ||| |||||||    
T  34639513 atacccaacaa 34639503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 24542420 - 24542519
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||| ||| ||||||| ||  ||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |||||  ||||||||||||||    
T  24542420 ggcatactaaaccgtgccagaatgttggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagtcaatactcaaatatccaacaa 24542519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 16308809 - 16308664
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgtt-ggaacatcatatctaacatcatacatga 116  Q
    |||||||| |||||||||| ||| || | || ||||||    ||| ||||||||||| |||  | |||||| |||||||| |||| ||||||| ||||||    
T  16308809 ttccttaaaaagataaagcatgcataaatcttggcacaacttcagagcacactgaactgtgctaggatgtttggaacatcgtatccaacatcacacatga 16308710  T
Q  117 atatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||||| | ||||||||| | |||||||||||||||    
T  16308709 atatttgttttagcaaaagtgaagccaacacacaaatatccaacaa 16308664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 20559317 - 20559438
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||||||||||| |  |||| | | | || ||||||||||||||||||||||||||| ||||||  | ||||||| ||||   || |||||||||     
T  20559317 ttccttaataagataaggattgcgcaaatcaagccacataaacagggcacactgaaccgtgccaagatactagaacatcgtatc---caacatacatgag 20559413  T
Q  118 tatttgttttagcaataatgaagcc 142  Q
    ||||||||||||||| |||||||||    
T  20559414 tatttgttttagcaacaatgaagcc 20559438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 17868362 - 17868233
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcat--acatg 115  Q
    |||||||| ||||||||| | |||||||| ||||||   || |||| ||||||||||||||||| |||||||||||||  |||| |||| |||  |||||    
T  17868362 ttccttaaaaagataaagtgcgcgtacaagtaggcatgaaaccagg-cacactgaaccgtgtcacgatgttggaacattgtatccaacaacataaacatg 17868264  T
Q  116 aatatttgttttagcaataatgaagccaata 146  Q
     |||||| |||||||||||||| | ||||||    
T  17868263 gatatttattttagcaataatgcaaccaata 17868233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 17878145 - 17878016
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcat--acatg 115  Q
    |||||||| ||||||||| | |||||||| ||||||   || |||| ||||||||||||||||| |||||||||||||  |||| |||| |||  |||||    
T  17878145 ttccttaaaaagataaagtgcgcgtacaagtaggcatgaaaccagg-cacactgaaccgtgtcacgatgttggaacattgtatccaacaacataaacatg 17878047  T
Q  116 aatatttgttttagcaataatgaagccaata 146  Q
     |||||| |||||||||||||| | ||||||    
T  17878046 gatatttattttagcaataatgcaaccaata 17878016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 26964991 - 26964901
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    |||||||||||||||||||||  | |||||  || || | ||||| |||||||||||||||||||  |||||||||||||||||| ||||||    
T  26964991 attccttaataagataaagcgcacatacaataagacata-aaacaaggcacactgaaccgtgtcagaatgttggaacatcatatccaacatc 26964901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 16136991 - 16136895
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaac 163  Q
    |||||||| || || |||||||| ||||| | |  ||||||  ||||||||||||||||| | ||| | ||||||||||||||||||||||||||||    
T  16136991 actgaaccatgacaggatgttggcacatcgtgttcaacatctcacatgaatatttgtttttggcaaaagtgaagccaatatacaaatatccaacaac 16136895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 19598441 - 19598497
Alignment:
Q  57 aaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||| |||||| ||||    
T  19598441 aaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttaca 19598497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 20764332 - 20764256
Alignment:
Q  87 ttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatata-caaatatccaacaa 162  Q
    |||||||| ||| || ||||||| ||| || ||||||||||||||||||||||||||||| | |||||| |||||||    
T  20764332 ttggaacaacatttccaacatcaaacaagagtatttgttttagcaataatgaagccaatacatcaaatacccaacaa 20764256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 23882097 - 23882041
Alignment:
Q  57 aaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||| |||||| ||||    
T  23882097 aaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttaca 23882041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 30425607 - 30425698
Alignment:
Q  22 ttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| ||| | | | |||||||  |||| | |||| ||||| ||| |||||||||||||||||||||| |||| ||||||    
T  30425607 ttaataagataaagcgcgcgcaaaccaaggcacaagaacatgacacattgaactgtgccaagatgttggaacatcatatccaacaccataca 30425698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 12444141 - 12444063
Alignment:
Q  84 atgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||| ||||||| |  ||||||  ||||||||||| ||||||| ||| | ||||||||||||||||||||||||||    
T  12444141 atgttggcacatcatgttcaacatctcacatgaatattcgttttaggcaaaagtgaagccaatatacaaatatccaaca 12444063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 19077909 - 19077959
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||| ||||    
T  19077909 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacatcttaca 19077959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 25970443 - 25970493
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||| ||||    
T  25970443 ggcacactgaaccgtgccaagatgttggagcatcatatccaacatcttaca 25970493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 25974883 - 25974933
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||| ||||    
T  25974883 ggcacactgaaccgtgccaagatgttggagcatcatatccaacatcttaca 25974933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 9385377 - 9385457
Alignment:
Q  83 gatgttggaacatcatatctaacatcatacatgaatatttgtttta-gcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| ||||| | || ||||||  || ||||||||||||||| |||| | |||| ||||||||||||||||||||||    
T  9385377 gatgttggcacatcgtgtccaacatctcacttgaatatttgttttaagcaaaagtgaatccaatatacaaatatccaacaa 9385457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 20003874 - 20003925
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    |||||||||||| |||||| ||| | ||||||||||||||||||||||||||    
T  20003874 acatgaatatttcttttaggcaaaagtgaagccaatatacaaatatccaaca 20003925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 24564435 - 24564525
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    ||||||||||||||||||||| ||||||||  ||||| | ||||| ||||||||||| ||||  | ||| || |||||||| ||| ||||||    
T  24564435 attccttaataagataaagcgcgcgtacaatcaggcata-aaacaaggcacactgaatcgtgctaggatatttgaacatcacatccaacatc 24564525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 12385251 - 12385201
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| || |||||||||||||| |||| |||||| ||||    
T  12385251 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttaca 12385201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 15002571 - 15002477
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgtttta-gcaataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| || || |||||||| ||||| | || ||||||  || ||||||||||||||| |||| || ||| |||| ||||||||||||||||    
T  15002571 actgaaccatgccacgatgttggcacatcgtgtccaacatctcacttgaatatttgttttaggcaaaaaagaaaccaacatacaaatatccaaca 15002477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 13196090 - 13196135
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    |||||||||||||||| || |||||||||||||| |||| ||||||    
T  13196090 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatc 13196135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 19894061 - 19894016
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    |||||||||||||||| |||||||||||| |||| |||| ||||||    
T  19894061 ggcacactgaaccgtgccaagatgttggagcatcgtatccaacatc 19894016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 24564545 - 24564622
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||  |||| |||||||||  |||| |||||| ||||||||| |||| |||||  ||||||||||||||||    
T  24564545 atgttggaacatggtatccaacatcataatcatggatatttattttagcaaaaatgcagcca--atacaaatatccaaca 24564622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 30425732 - 30425777
Alignment:
Q  116 aatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    ||||||| ||||||||||||||||| ||||| ||||||||| ||||    
T  30425732 aatatttattttagcaataatgaagtcaatacacaaatatctaaca 30425777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 33666557 - 33666602
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    |||||||||||||||| || ||||||||| ||||||||| ||||||    
T  33666557 ggcacactgaaccgtgccaggatgttggagcatcatatccaacatc 33666602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 15930247 - 15930203
Alignment:
Q  57 aaacagggcacactgaaccgtgtcaagatgttggaacatcatatc 101  Q
    ||||| |||||||||||||||| || |||||||||||||| ||||    
T  15930247 aaacaaggcacactgaaccgtgccaggatgttggaacatcgtatc 15930203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 24118265 - 24118405
Alignment:
Q  21 cttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatat 120  Q
    |||||||||||||||||  | || | | ||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||    
T  24118265 cttaataagataaagcgcacataaaccaaggcacataaacaggacacactgaaccgtgccaagatgttggaacagcatatccaacatcatacataaatat 24118364  T
Q  121 ttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| |||||||||| |||||| ||||||||| ||||    
T  24118365 ttgttttatcaataatgaaaccaatacacaaatatctaaca 24118405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 22183756 - 22183611
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||||||||||  |||||| | | || ||||||||||||||||||||||||||| |||||| |||||||||| |||| ||||||||||||||     
T  22183756 ttccttaataagataaagattgcgtaaaccaagtcacataaacagggcacactgaaccgtgccaagatattggaacatcgtatccaacatcatacatgag 22183657  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaac 163  Q
    ||||||||||||  | |||||||||||||  |||||| ||||||||    
T  22183656 tatttgttttagtgacaatgaagccaatactcaaatacccaacaac 22183611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 17660870 - 17660759
Alignment:
Q  50 ggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatac 149  Q
    ||||||| ||||||| ||| ||||| ||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  17660870 ggcacattaacagggaacattgaactgtgccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagcaataatgaagccaatatac 17660771  T
Q  150 aaatatccaaca 161  Q
    ||||||||||||    
T  17660770 aaatatccaaca 17660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 20127703 - 20127803
Alignment:
Q  61 agggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaac 160  Q
    |||||||||||||||||  | ||||||||||||||| |||| |||||| || |||||||||||||||||||| | ||| ||||| | |||||||||||||    
T  20127703 agggcacactgaaccgtacccagatgttggaacatcgtatccaacatcttaaatgaatatttgttttagcaaaagtgaggccaacaaacaaatatccaac 20127802  T
Q  161 a 161  Q
    |    
T  20127803 a 20127803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 20740421 - 20740277
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| |||||||||||||| || | || ||||||    ||||| ||||||||| |||  | |||||||||||||  |||| ||||||| |||||||    
T  20740421 ttccttaaaaagataaagcgtgcataaatcttggcacaacttcagggtacactgaactgtgctaggatgttggaacattgtatccaacatcacacatgaa 20740322  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| ||||||| ||| | | |||||||||||||    
T  20740321 tatttgttttagcaaaaatgaagtcaacacataaatatccaacaa 20740277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 25674425 - 25674522
Alignment:
Q  17 attccttaataagataaa-gcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||||| ||| | ||||||||| ||| ||||||| ||||||||||||| |||||| |||||||||||| ||||| |||||| ||||    
T  25674425 attccttaataagataaaagcgcgtgtacaactaagcatataaacaaggcacactgaaccatgtcaaaatgttggaacattatatccaacatcgtaca 25674522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 17920199 - 17920104
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| || || |||||||| ||||| | |  ||||||  ||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  17920199 actgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 17920104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 34404844 - 34404749
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| || || |||||||| ||||| | |  ||||||  ||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  34404844 actgaaccatgccaggatgttggcacatcgtgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 34404749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 20714071 - 20714007
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaata 146  Q
    |||||||||||| ||||| |||||| ||  |||| ||||||||||||||||||||| ||||||||    
T  20714071 atgttggaacatgatatccaacatcctaaacatggatatttgttttagcaataatgcagccaata 20714007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 26182600 - 26182548
Alignment:
Q  113 atgaatatttgttttag-caataatgaagccaatatacaaatatccaacaaca 164  Q
    ||||||||||||||||| ||| | ||||| |||||||||||||||||||||||    
T  26182600 atgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaacaaca 26182548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 26328518 - 26328478
Alignment:
Q  108 catacatgaatatttgttttagcaataatgaagccaatata 148  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  26328518 catacatgaatatttgttttagcaataatgcaaccaatata 26328478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 7897284 - 7897233
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||||||||| ||| | ||| ||||||||||||||||||||||    
T  7897284 acatgaatatttgttttaggcaaaagtgacgccaatatacaaatatccaaca 7897233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 20497550 - 20497467
Alignment:
Q  80 caagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||| ||||| | |  ||||||  |||||||||||| |||||| ||| | ||||||||||||| |||||||||||||    
T  20497550 caagatgttggcacatcttgtacaacatctcacatgaatatttattttaggcaaaagtgaagccaatataaaaatatccaacaa 20497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 13941408 - 13941358
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||| |||||| ||||| ||||||||||||||||||| |||||| ||||    
T  13941408 ggcacattgaaccatgtcaggatgttggaacatcatatccaacatcttaca 13941358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 18221876 - 18221926
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||| |  |||||||||||||||||||||| |||||| ||||    
T  18221876 ggcacactgaaccattccaagatgttggaacatcatatccaacatcttaca 18221926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 23624607 - 23624657
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| || |||||||||||||| |||| |||||| ||||    
T  23624607 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttaca 23624657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 30605084 - 30605034
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| || |||||||||||||| |||| |||||| ||||    
T  30605084 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttaca 30605034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 11205525 - 11205574
Alignment:
Q  113 atgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||||||  | || |||||||| |||||||||||||||||    
T  11205525 atgaatatttgttttaggcaaaaagaagccaacatacaaatatccaacaa 11205574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 22082083 - 22082034
Alignment:
Q  64 gcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||| || |||||||||||||| |||| |||||| ||||    
T  22082083 gcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttaca 22082034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 22130249 - 22130201
Alignment:
Q  111 acatgaatatttgttttagcaataatgaagccaatatacaaatatccaa 159  Q
    ||||||||||||||||||| || | ||||||||| | ||||||||||||    
T  22130249 acatgaatatttgttttagaaaaagtgaagccaacacacaaatatccaa 22130201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 26037642 - 26037687
Alignment:
Q  115 gaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||||||||||| |||||  ||||||||| |||||||    
T  26037642 gaatatttgttttagcaataatgcagcca--atacaaatacccaacaa 26037687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 18477815 - 18477954
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||||||||||  |||||| | | || ||||||||||||||||||||||||||| ||||||||||||||||| ||||   || |||||||||     
T  18477815 ttccttaataagataaagattgcgtaaaccaagccacataaacagggcacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgag 18477911  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaac 160  Q
    ||||||||||||||| |||||||||||||| |||||| |||||    
T  18477912 tatttgttttagcaacaatgaagccaatatccaaatacccaac 18477954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 8225808 - 8225944
Alignment:
Q  22 ttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatt 121  Q
    |||||||||||||   |||||| | | || |||||||| |||||||||||||||||| ||||||||||||||||| ||||   || ||||||||| ||||    
T  8225808 ttaataagataaatattgcgtaaaccaagccacataaatagggcacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgagtatt 8225904  T
Q  122 tgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||| |||||||||||||  |||||| ||||||    
T  8225905 tgttttagcaaaaatgaagccaatacccaaatacccaaca 8225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 214486 - 214390
Alignment:
Q  65 cacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |||||  |||||| ||||||    
T  214486 cacactgaaccgtgccaagatgttggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagtcaatactcaaatacccaaca 214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 17042153 - 17042054
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||||| || ||||| |||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||  |||||| |||||||    
T  17042153 ggcacactgaaccgtgccaggatgtcggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaatactcaaatacccaacaa 17042054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 31650439 - 31650549
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    |||| |||||||||||||||||| ||| |||||||||||||| || |||| ||||||||||| || |||||||||| |||| |||||||||||||  |||    
T  31650439 cacacaaacagggcacactgaacggtgccaagatgttggaacgtcgtatccaacatcatacaagagtatttgtttttgcaacaatgaagccaatactcaa 31650538  T
Q  152 atatccaacaa 162  Q
    ||| |||||||    
T  31650539 atacccaacaa 31650549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 11657020 - 11657161
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||||||||||  |||||| | | || ||||||| || | ||| |||||||||||||||||||||||||||| ||||   || |||||||||     
T  11657020 ttccttaataagataaagattgcgtaaaccaagccacataaccatgacacgctgaaccgtgtcaagatgttggaacatcgtatc---caacatacatgag 11657116  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||| ||||||||| |||||||| ||||  |||||| |||||||    
T  11657117 tatttattttagcaacaatgaagctaatacccaaatacccaacaa 11657161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 25020151 - 25020245
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    |||| ||||| |||||||| ||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||| ||| ||||| |||||||    
T  25020151 cacacaaacaaggcacactaaaccgtggcaagatgttggaacatcgtatccaacatcatacatgagtatttgttttaacaacaatgaggccaata 25020245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 15674242 - 15674133
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    |||| ||| |||||||||||||| ||| ||||||||||| ||||| |||| |||||| ||||||| ||||||||||||||| ||||||| |||||  |||    
T  15674242 cacacaaatagggcacactgaactgtgccaagatgttgggacatcgtatccaacatcttacatgagtatttgttttagcaacaatgaagtcaatactcaa 15674143  T
Q  152 atatccaaca 161  Q
    ||| ||||||    
T  15674142 atacccaaca 15674133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 13920224 - 13920368
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||| ||| |||||||||||||| || | || ||||||    ||||||||||||||| |||  | |||||| ||||||| |||| ||||||| |||||||    
T  13920224 ttccataaaaagataaagcgtgcataaatcttggcacaacttcagggcacactgaactgtgctaggatgttagaacatcgtatccaacatcacacatgaa 13920323  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| | ||||||||| | ||||||||| |||||    
T  13920324 tatttgttttagcaaaagtgaagccaacacacaaatatctaacaa 13920368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 3444457 - 3444348
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    ||||||| ||| ||||||||||||||  ||  |||| |||||||| |||| |||||| | ||||||||||| ||||||||||||||| || |||||||||    
T  3444457 cacataatcagagcacactgaaccgtaccac-atgtaggaacatcgtatccaacatcttgcatgaatatttattttagcaataatgacgctaatatacaa 3444359  T
Q  152 atatccaacaa 162  Q
    |||||||||||    
T  3444358 atatccaacaa 3444348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 7495343 - 7495242
Alignment:
Q  61 agggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaac 160  Q
    |||||||||||||| |||  | ||||||| |||| | |||| ||||||| |||||||||||||||||||||| | ||||||||| | |||||||||||||    
T  7495343 agggcacactgaactgtgctaggatgttgtaacaacgtatccaacatcacacatgaatatttgttttagcaaaagtgaagccaacacacaaatatccaac 7495244  T
Q  161 aa 162  Q
    ||    
T  7495243 aa 7495242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 979818 - 979724
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||||||| || |||||  ||||| | ||||| |||||||||||||||| | |||||||||||||||||||| |||||| ||||    
T  979818 ttccttaataagataaagcgcgcatacaatcaggcata-aaacaaggcacactgaaccgtgccgagatgttggaacatcatatccaacatcttaca 979724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 7478558 - 7478479
Alignment:
Q  83 gatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||| | | ||||||| | |||||||||||||||    
T  7478558 gatgttggaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtaaagccaacacacaaatatccaacaa 7478479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 21253396 - 21253314
Alignment:
Q  57 aaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaaca--tcatacatgaatatttgttttagcaataatg 137  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||||||   || ||||| |||||||||||||||||||||    
T  21253396 aaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatctaacaacacaaacatggatatttgttttagcaataatg 21253314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 14406065 - 14406000
Alignment:
Q  96 catatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |||||| |||||| | ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  14406065 catatccaacatcttgcatgaatatttgttttagcaataataaaaccaatatacaaatatccaaca 14406000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 13914499 - 13914643
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| |||||||||||||| || | || ||||||    ||||||||||||||| |||  | |||| ||||||||| |||| ||||||| |||||||    
T  13914499 ttccttaaaaagataaagcgtgcataaatcttggcacaacttcagggcacactgaactgtgctaggatgatggaacatcgtatccaacatcacacatgaa 13914598  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||| ||||||||| | |||| ||||   ||||||||| |||||    
T  13914599 tatttattttagcaaaagtgaaaccaaagcacaaatatctaacaa 13914643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 8749787 - 8749882
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||| || || |||||||| ||||||| |  ||||||  ||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  8749787 actgaaccatgccaggatgttggcacatcatgttcaacatctcacatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 8749882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 3551908 - 3551822
Alignment:
Q  26 taagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||| ||| ||||  ||||| | ||||| |||||||||||||||| || ||||||||||||||||||| |||||| ||||    
T  3551908 taagataaagcgcgcgaacaatcaggcata-aaacaaggcacactgaaccgtgccacgatgttggaacatcatatccaacatcttaca 3551822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 6578649 - 6578571
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||  |||| ||||||| |  |||| ||||||||||||||||||||| |||||  |||||||||||||||||    
T  6578649 atgttggaacatagtatccaacatcacaaacatggatatttgttttagcaataatgcagcca--atacaaatatccaacaa 6578571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 6578940 - 6578892
Alignment:
Q  65 cacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||| |||||||||||||| |||| |||||| ||||    
T  6578940 cacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttaca 6578892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 6578848 - 6578797
Alignment:
Q  111 acatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||| ||||||||||||||| |||||||||||||  |||||| |||||||    
T  6578848 acatgagtatttgttttagcaacaatgaagccaatactcaaatagccaacaa 6578797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 9030789 - 9030738
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  9030789 acatgaatatttgttttaggcaaaagtgaagccaatatataaatatccaaca 9030738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 18482764 - 18482716
Alignment:
Q  65 cacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||| ||||||| |||||| |||| |||||| ||||    
T  18482764 cacactgaaccgtgtcaggatgttgaaacatcgtatccaacatcttaca 18482716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 27111763 - 27111891
Alignment:
Q  28 agataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgtttt 127  Q
    ||||||||||  |||| | || ||||||||||||||||||| ||||||||| || |||||||||||||| |||| ||||||||  |||||||||||||||    
T  27111763 agataaagcgcacgtaaaccttggcacataaacagggcacattgaaccgtgccaggatgttggaacatcgtatccaacatcatttatgaatatttgtttt 27111862  T
Q  128 agcaataatgaagccaatatacaaatatc 156  Q
    |||||||||||| ||||||||||||||||    
T  27111863 agcaataatgaaaccaatatacaaatatc 27111891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 31588201 - 31588321
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| ||||||||||  ||||| | | |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||     
T  31588201 ttccttaaaaagataaagcacgcgtaaaccaaggcacataaacagggcacactgaaccgtgacaagatgttggaacattatatccaacatcatacatgag 31588300  T
Q  118 tatttgttttagcaataatga 138  Q
    ||||||||||||||| |||||    
T  31588301 tatttgttttagcaacaatga 31588321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 27108174 - 27108308
Alignment:
Q  28 agataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgtttt 127  Q
    |||||||||| || || | || |||||||||||| |||||||||||||||| || |||||||||||||| |||| ||||||||  |||||||||| ||||    
T  27108174 agataaagcgcgcataaatcttggcacataaacatggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcatgtatgaatatttatttt 27108273  T
Q  128 agcaataatgaagccaatatacaaatatccaacaa 162  Q
    || |||||||||| |||||||||||||||||||||    
T  27108274 agaaataatgaagtcaatatacaaatatccaacaa 27108308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 36397928 - 36397787
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||||||||||  |||||| | | || ||||||||||||||||||||||||||| ||||||||||||||||| ||||   || |||||||||     
T  36397928 ttccttaataagataaagattgcgtaaaccaagccacataaacagggcacactgaaccgtgccaagatgttggaacatcgtatc---caacatacatgag 36397832  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| |||||||||||||  |||||| |||||||    
T  36397831 tatttgttttagcaacaatgaagccaatacccaaatacccaacaa 36397787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 19197772 - 19197637
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatga 116  Q
    |||||||||  |||||||||| | ||| | |  ||||||||| |||||||||||||||||||  || |||||||||||||||||| |||||||   ||||    
T  19197772 attccttaaatagataaagcgcgtgtaaatcatggcacataagcagggcacactgaaccgtgctaacatgttggaacatcatatccaacatcaagtatga 19197673  T
Q  117 atatttgttttagcaataatgaagccaatatacaaa 152  Q
    |||||| |||||||||||||||||||||||||||||    
T  19197672 atattttttttagcaataatgaagccaatatacaaa 19197637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 24311257 - 24311163
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    |||| ||| |||||||||||||||||| || |||||||||||||  |||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  24311257 cacacaaatagggcacactgaaccgtgccaggatgttggaacattgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaata 24311163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 24313083 - 24312941
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| || ||||||| |||| | | | || |||| |||||||||||| ||||||||| || ||| |||||||||  |||| ||||||||||||||     
T  24313083 ttccttaaaaacataaagcttgcgaaaaccaagccacacaaacagggcacattgaaccgtgccaggatattggaacattgtatccaacatcatacatgag 24312984  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaac 160  Q
    ||||||| ||||||| |||||| ||||||  |||||| |||||    
T  24312983 tatttgtgttagcaacaatgaatccaatactcaaatacccaac 24312941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 20645666 - 20645604
Alignment:
Q  84 atgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  20645666 atgttggaacatcgtatccaacatcatgcatgaatatttgttttagaaataatgaagccaata 20645604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 25347897 - 25348007
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    |||||||| | ||||||||||| |||  | | ||||||||| ||| |||| |||||| | ||||||||||||||||||||| | ||| ||||||||| ||    
T  25347897 cacataaataaggcacactgaatcgtacccatatgttggaaaatcttatccaacatcttgcatgaatatttgttttagcaaaagtgaggccaatatataa 25347996  T
Q  152 atatccaacaa 162  Q
    ||||| |||||    
T  25347997 atatctaacaa 25348007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 13314364 - 13314282
Alignment:
Q  80 caagatgttggaacatcatatctaacatcatacatgaatatttgtttta-gcaataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||| ||||||| || ||||||  || ||||||||||||||| |||| | ||||||||| ||||||||||||||||    
T  13314364 caagatgttggcacatcatgtccaacatctcacttgaatatttgttttaggcaaaagtgaagccaacatacaaatatccaaca 13314282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 18766426 - 18766520
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| || || |||||||| ||||||| |  ||||||  ||||||||||||||||||| ||| | ||||| ||||||||||||||||||||    
T  18766426 actgaaccatggcaggatgttggcacatcatgttcaacatctcacatgaatatttgttttagacaaaagtgaagtcaatatacaaatatccaaca 18766520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 21249636 - 21249541
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||||||| | ||||||  |||||   ||||| |||||||| ||||||| || |||||||||||||| |||| |||||| ||||    
T  21249636 attccttaataagataaagcgcgtgtacaatcaggcatg-aaacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacatcttaca 21249541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 18605964 - 18605913
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  18605964 acatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaaca 18605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 20068844 - 20068793
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    |||| |||||||||||||| ||| | ||||||||||||||||||||||||||    
T  20068844 acataaatatttgttttagacaaaagtgaagccaatatacaaatatccaaca 20068793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 26859393 - 26859350
Alignment:
Q  53 acataaacagggcacactgaaccgtgtcaagatgttggaacatc 96  Q
    ||||||||| |||||| ||||||||| |||||||||||||||||    
T  26859393 acataaacatggcacaatgaaccgtgccaagatgttggaacatc 26859350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 52346 - 52236
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||| |||| ||||||||||||||||||||||||| |||| | ||||||||| | ||||    
T  52346 cacataaacaggggacactgaaccgtaccaagatgttggaacatcgtatccaacatcatacatgaatatttgtttttgcaaaagtgaagccaacacacaa 52247  T
Q  152 atatccaacaa 162  Q
    |||||||||||    
T  52246 atatccaacaa 52236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 45372 - 45263
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||| || | ||||| ||| | ||||    
T  45372 cacataaacagggcacactgaaccatgccaagatgttggaacatcgtatccaacatcatacatgaatatttgttttagaaaaagtgaagtcaacacacaa 45273  T
Q  152 atatccaaca 161  Q
    ||||||||||    
T  45272 atatccaaca 45263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 5722 - 5829
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaa 151  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| ||||||||||||||||| || | |||||| ||||| |||    
T  5722 cacataaacagggcacactgaaccatgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttaggaaaagtgaagctaatattcaa 5821  T
Q  152 atatccaa 159  Q
    ||||||||    
T  5822 atatccaa 5829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 11977 - 12054
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag 129  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  11977 cacataaacagggcacactgaaccatgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttag 12054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 50348 - 50204
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    |||||||| |||||||||||||| || | || ||||||    ||||||||||||||| |||  | |||||||||||||| |||| ||||||| |||||||    
T  50348 ttccttaaaaagataaagcgtgcataaatcttggcacaacttcagggcacactgaactgtgctaggatgttggaacatcgtatccaacatcacacatgaa 50249  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| | ||||||||| | |||||||||||||||    
T  50248 tatttgttttagcaaaagtgaagccaacacacaaatatccaacaa 50204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 36275 - 36422
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||||||||||||||||  |||||| | | |  |||||||||||||||| || ||||||| ||||||||||||||||| | || |||||||||||||||    
T  36275 ttccttaataagataaagattgcgtaaaccaaaccacataaacagggcacgctcaaccgtgccaagatgttggaacatcgtgtcaaacatcatacatgaa 36374  T
Q  118 ---tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
       ||||| ||||||||| ||||||| |||||  |||||| |||||||    
T  36375 tattattttttttagcaacaatgaagtcaatactcaaatacccaacaa 36422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 41333 - 41478
Alignment:
Q  18 ttccttaataagataaagcg--tgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatg 115  Q
    |||||||||||||||||  |  |||||| | | || |||||||||| | |||||||| | ||| ||||||||||||||||| |||| || || |||||||    
T  41333 ttccttaataagataaaaagattgcgtaaaccaagccacataaacatgacacactgagctgtgccaagatgttggaacatcgtatccaatattatacatg 41432  T
Q  116 aatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |  |||||||||||||| || ||||| ||||  |||||| ||||||    
T  41433 agcatttgttttagcaacaaagaagcaaatactcaaatacccaaca 41478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 36572 - 36650
Alignment:
Q  84 atgttggaacatcatatctaacatcata--catgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||  |||| ||||||| |  |||| ||||||||||||||||||||| |||||  ||||||||| |||||||    
T  36572 atgttggaacatattatccaacatcacaaacatggatatttgttttagcaataatgcagcca--atacaaatacccaacaa 36650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 11899 - 12045
Alignment:
Q  16 cattccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatg 115  Q
    ||||||||||  |||||| ||||||||| |||  |||||||   ||||||||||||||||||| || ||||||| |||||| | || ||||||| || ||    
T  11899 cattccttaaatagataatgcgtgcgtataacatggcacatgtgcagggcacactgaaccgtgccaggatgttgaaacatcgtgtccaacatcacacttg 11998  T
Q  116 aatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    | ||||||||||||||| | || || ||| |||||||||||||||||    
T  11999 attatttgttttagcaaaagtgcagtcaacatacaaatatccaacaa 12045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 12376289 - 12376190
Alignment:
Q  60 cagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaa 159  Q
    |||||||||||||||| |  | |  |||||||||||| |||| |||||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  12376289 cagggcacactgaaccatacccacctgttggaacatcttatccaacatcttgcatgaatatttgttttagcaataatgaggccaacatacaaatatccaa 12376190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 12813944 - 12813878
Alignment:
Q  83 gatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatac 149  Q
    |||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||||||    
T  12813944 gatgttggaacaacatatccaacatcatactagagtatttgttttagcaataatgaagccaatatac 12813878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 1684676 - 1684820
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaa 117  Q
    ||||| || |||||||||| |||||| | || ||||||    ||||||||||||||| |||  | ||||||||| |||| |||| ||||| | |||||||    
T  1684676 ttcctcaaaaagataaagcttgcgtaaatcttggcacaacttcagggcacactgaactgtgctaggatgttggagcatcgtatcaaacatgacacatgaa 1684775  T
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||| ||  |||||||||| | | |||||||||||||    
T  1684776 tatttgttttagaaaatatgaagccaacacaaaaatatccaacaa 1684820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 23863698 - 23863622
Alignment:
Q  52 cacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgtttta 128  Q
    |||| |||||||||||||||||| ||| ||| || ||||||||||||||| |||||| ||||||| |||||||||||    
T  23863698 cacacaaacagggcacactgaactgtgccaacattttggaacatcatatccaacatcctacatgagtatttgtttta 23863622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 20254315 - 20254226
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacat 107  Q
    |||||||||||||||||| || |||||||   ||||| | ||| ||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  20254315 attccttaataagataaaacgcgcgtacattaaggcataaaaaaagg-cacactgaaccgtgtcaggatgttggaacatcatatccaacat 20254226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 18622421 - 18622477
Alignment:
Q  57 aaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||| |||||| ||||    
T  18622421 aaacaaggcacactgaaccgtgccaagatgttggaacatcgtatccaacatcttaca 18622477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 23867631 - 23867572
Alignment:
Q  101 ctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaac 160  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||  |||||| |||||    
T  23867631 ctaacattatacatgagtatttgttttagcaacaatgaagccaatactcaaatacccaac 23867572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 17880149 - 17880055
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttag-caataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| || ||||||||||| ||||| | |  ||||||  ||||| ||||||||||||| ||| | ||||||||||||||||| ||||||||    
T  17880149 actgaaccatgccaagatgttggcacatcgtgttcaacatctcacatgcatatttgttttaggcaaaagtgaagccaatatacaaagatccaaca 17880055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 24849537 - 24849475
Alignment:
Q  84 atgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaata 146  Q
    ||||| ||||||  |||| |||||||||||||| ||||||||||||||| ||||||| |||||    
T  24849537 atgttagaacattgtatccaacatcatacatgagtatttgttttagcaacaatgaagtcaata 24849475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 9997555 - 9997619
Alignment:
Q  84 atgttggaacatcatatctaacat--catacatgaatatttgttttagcaataatgaagccaata 146  Q
    ||||||||||||  |||| |||||  || ||||||||||||||||||||||||||| ||||||||    
T  9997555 atgttggaacatagtatccaacattacaaacatgaatatttgttttagcaataatgcagccaata 9997619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 17280678 - 17280727
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaa 159  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  17280678 acatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaa 17280727  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 12240949 - 12241009
Alignment:
Q  103 aacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaac 163  Q
    |||||| ||| || ||||||| |||||||| ||||| ||||| ||||||||||||||||||    
T  12240949 aacatcttacttgtatatttgatttagcaaaaatgatgccaacatacaaatatccaacaac 12241009  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 12814049 - 12813969
Alignment:
Q  18 ttccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcat 98  Q
    |||||||||||||||||| | | | | | | || |||| || |||||| |||||||||||| |||||||||||||||||||    
T  12814049 ttccttaataagataaagtgcgtgaaaaccaagccacaaaaccagggcccactgaaccgtgccaagatgttggaacatcat 12813969  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 39081697 - 39081749
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||| |||||| ||| | |||||||||||||||||||||||||||    
T  39081697 acatgaatatttattttaggcaaaagtgaagccaatatacaaatatccaacaa 39081749  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 45136877 - 45136921
Alignment:
Q  64 gcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  45136877 gcacactaaaccgtgtcaggatgttggaacatcatatccaacatc 45136921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 23250483 - 23250582
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||| || || |||||||||||||| | || || |||| || |||||||||||| ||| || | || |||||| | |||||||||| ||||    
T  23250483 ggcacactgaaccatgccaggatgttggaacatcgtgtccaatatcacacttgaatatttgttgtagaaaaagtgcagccaacacacaaatatcccacaa 23250582  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 26537055 - 26537098
Alignment:
Q  65 cacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    |||||||||||||| || ||||||||||||||||||| ||||||    
T  26537055 cacactgaaccgtgccatgatgttggaacatcatatccaacatc 26537098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 27924846 - 27924796
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||| ||||||| |||||||||||||| |||| |||||| ||||    
T  27924846 ggcacactgaatcgtgtcaggatgttggaacatcttatccaacatcttaca 27924796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 8730721 - 8730770
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaa 159  Q
    ||||||||||||||||||| ||| | ||||| ||||||||||||||||||    
T  8730721 acatgaatatttgttttaggcaaaagtgaagtcaatatacaaatatccaa 8730770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 33465571 - 33465478
Alignment:
Q  68 actgaaccgtgtcaagatgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 161  Q
    |||||||| || || |||||||| ||||| | || ||||||  || ||||||||| |||  |||| | ||||||||| ||||||||||||||||    
T  33465571 actgaaccatgccaggatgttggcacatcgtgtccaacatctcacttgaatatttttttaggcaaaagtgaagccaacatacaaatatccaaca 33465478  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 9997363 - 9997407
Alignment:
Q  118 tatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||| |||||||||||||  |||||| |||||||    
T  9997363 tatttgttttagcaacaatgaagccaatactcaaatacccaacaa 9997407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 33977827 - 33977875
Alignment:
Q  65 cacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||| |||||| ||||||||||||| ||||| |||||| ||||    
T  33977827 cacactgaactgtgtcaggatgttggaacataatatccaacatcttaca 33977875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 14348 - 14426
Alignment:
Q  84 atgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||| |||| |||||| | |||||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  14348 atgttggaacatcgtatccaacatcttgcatgaatatttgttttaaaaataatgaggccaacatacaaatatccaacaa 14426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 9373 - 9294
Alignment:
Q  84 atgttggaacatcatatctaacatcatacatgaatatttgttttagcaataatgaagccaatata-caaatatccaacaa 162  Q
    ||||||||||| ||| || ||||||| ||| || ||||||||||||||||||||||||||||| | ||||||||||||||    
T  9373 atgttggaacaacatttccaacatcaaacaagagtatttgttttagcaataatgaagccaatacaccaaatatccaacaa 9294  T

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Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 3911 - 3963
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaacaa 162  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  3911 acatgaatatttgttttaggcaaaagtgaagccaatatacaaatatccaacaa 3963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 728 - 778
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||| ||||    
T  728 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacatcttaca 778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 822 - 873
Alignment:
Q  111 acatgaatatttgttttagcaataatgaagccaatatacaaatatccaacaa 162  Q
    |||||||||||||||||||||| ||||||| |||||  |||||| |||||||    
T  822 acatgaatatttgttttagcaacaatgaagacaatactcaaatacccaacaa 873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 17518 - 17468
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||  | |||||||||||||||||||||||||| ||||    
T  17518 ggcacactgaaccgtggtaggatgttggaacatcatatctaacatcttaca 17468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 26912 - 26862
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcataca 113  Q
    ||||||||||||||||  | |||||||||||||||||||||||||| ||||    
T  26912 ggcacactgaaccgtggtaggatgttggaacatcatatctaacatcttaca 26862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 38026 - 38122
Alignment:
Q  17 attccttaataagataaagcgtgcgtacaactaggcacataaacagggcacactgaaccgtgtcaagatgttggaacatcatatctaacatcatacat 114  Q
    ||||||||||||||||||||| ||||||||  | ||| | ||||| || ||||| ||| ||| || |||||||||||||| |||| |||||| |||||    
T  38026 attccttaataagataaagcgcgcgtacaatcaagcata-aaacaaggtacacttaactgtgccaggatgttggaacatcgtatccaacatcttacat 38122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 16339 - 16290
Alignment:
Q  111 acatgaatatttgttttag-caataatgaagccaatatacaaatatccaa 159  Q
    |||||||||||| |||||| ||| | ||||||||||||||||||||||||    
T  16339 acatgaatatttattttaggcaaaagtgaagccaatatacaaatatccaa 16290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 16271 - 16316
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacatcatatctaacatc 108  Q
    |||||||||||||||| || |||||||||||||| |||| ||||||    
T  16271 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatc 16316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 37356 - 37388
Alignment:
Q  63 ggcacactgaaccgtgtcaagatgttggaacat 95  Q
    ||||||||||||||||||| |||||||||||||    
T  37356 ggcacactgaaccgtgtcaggatgttggaacat 37388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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