View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_high_148 (Length: 266)

Name: NF13763_high_148
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_high_148
NF13763_high_148
[»] chr8 (1 HSPs)
chr8 (13-266)||(27294524-27294777)
[»] chr3 (27 HSPs)
chr3 (45-197)||(21945632-21945784)
chr3 (45-197)||(22034525-22034677)
chr3 (45-197)||(22115093-22115245)
chr3 (45-197)||(22186996-22187148)
chr3 (45-196)||(21937161-21937312)
chr3 (45-197)||(22052741-22052893)
chr3 (46-197)||(22028009-22028160)
chr3 (33-197)||(21930417-21930581)
chr3 (45-197)||(22179425-22179577)
chr3 (45-192)||(22104731-22104878)
chr3 (45-197)||(30989611-30989763)
chr3 (70-197)||(22615565-22615692)
chr3 (49-163)||(18967325-18967439)
chr3 (86-197)||(22621220-22621331)
chr3 (47-197)||(22657372-22657522)
chr3 (62-194)||(22208045-22208177)
chr3 (49-191)||(22648470-22648612)
chr3 (92-141)||(22436996-22437045)
chr3 (95-143)||(22635863-22635911)
chr3 (95-143)||(22368272-22368320)
chr3 (89-147)||(2749082-2749140)
chr3 (84-141)||(2807349-2807406)
chr3 (95-196)||(22431459-22431560)
chr3 (89-145)||(2818644-2818700)
chr3 (95-143)||(22358362-22358410)
chr3 (95-143)||(22468308-22468356)
chr3 (95-143)||(22632225-22632273)
[»] chr1 (3 HSPs)
chr1 (45-197)||(34989225-34989377)
chr1 (34-197)||(34975379-34975542)
chr1 (86-197)||(34980211-34980322)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 27294524 - 27294777
Alignment:
Q  13 ctctttacattgaggacgttgaaaaatattttttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaagga 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27294524 ctctttacattgaggacgttgaaaactattttttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggaggacaagga 27294623  T
Q  113 aaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaatagactcttccatcac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27294624 aaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaatagactcttccatcac 27294723  T
Q  213 cttgactatcgtgtataaaagtttgcaacgcttgttgatcctttctatagactc 266  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27294724 cttgactatcgtgtataaaagtttgcaacacttgttgatcctttctatagactc 27294777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 21945632 - 21945784
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21945632 ttgattggatggtaaagggaagggaggagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacag 21945731  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||||||||||||  ||||| |||| | || |||||||||||| ||||||||||    
T  21945732 caaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctcaat 21945784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 22034525 - 22034677
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    |||||||||||||| |||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  22034525 ttgattggatggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacag 22034624  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||||||| |||| |||||| |||| |||||||||||||| |||||||||||||    
T  22034625 caaggatatcatgggacactttgattatcgtgtatggattacagtgtctcaat 22034677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 22115093 - 22115245
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    |||||||||||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  22115093 ttgattggatggtatagggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaaccactctatcaaagaaagtttttgacag 22115192  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||||||| |||| |||||| |||| | ||||||||||||||||||||||||||    
T  22115193 caaggatatcattggacactttgattgtcgtgtatggatcacagtgtctcaat 22115245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 22186996 - 22187148
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    |||| |||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  22186996 ttgagtggatggtaaagggaagggaagagcgcactgttctttctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacag 22187095  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||||||| |||| |||||| |||| | |||||||||||| |||||||||||||    
T  22187096 caaggatatcatgggacactttgattgtcgtgtatggattacagtgtctcaat 22187148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 21937161 - 21937312
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    ||||||||||| |||||||||||  |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  21937161 ttgattggatgataaagggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacag 21937260  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaa 196  Q
    |||||||||| | |||||| |||| | |||||||||||||||||||||||||    
T  21937261 caaggatgtcgttggacactttgattgtcgtgtatggatcacagtgtctcaa 21937312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 22052741 - 22052893
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  22052741 ttgattggatggtaaagggaagggaagagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacag 22052840  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||||||| |||| |||||  |||| | ||| |||||||| |||||||||||||    
T  22052841 caaggatatcattggacattttgattgtcgggtatggattacagtgtctcaat 22052893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 22028009 - 22028160
Alignment:
Q  46 tgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagc 145  Q
    ||||||| ||||| |||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  22028009 tgattggttggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagc 22028108  T
Q  146 aaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    |||||| |||| |||||| |||| | |||||||||||| |||||||||||||    
T  22028109 aaggatatcatgggacactttgattgtcgtgtatggattacagtgtctcaat 22028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 21930417 - 21930581
Alignment:
Q  33 gaaaaatattttttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaa 132  Q
    ||||||||||  |||||||||||||| |||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21930417 gaaaaatattgattgattggatggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaa 21930516  T
Q  133 agtttttgacagcaaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||||||||||||||||||| |||| |||||  || | |  || ||||||||||||||||||||||    
T  21930517 agtttttgacagcaaggatatcattggacattttcatttccgagtatggatcacagtgtctcaat 21930581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 22179425 - 22179577
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    |||||||||||||| |||||||||||||| ||||||| || |  ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  22179425 ttgattggatggtacagggaaggaaagagcgcactgtggtattcgtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacag 22179524  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||||||| |||| |||||| |||| | |||||||||||| |||||||||||||    
T  22179525 caaggatatcattggacactttgattgtcgtgtatggattacagtgtctcaat 22179577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 22104731 - 22104878
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    ||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  22104731 ttgattggatggtaaagggaacggaagagcgcactgtagtttcggtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacag 22104830  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtc 192  Q
    ||||||||| || |||||| |||| | || ||| ||||||||||||||    
T  22104831 caaggatgtaattggacactttgattgtcatgtttggatcacagtgtc 22104878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 197
Target Start/End: Complemental strand, 30989763 - 30989611
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    |||||||| |||||||||||||  | ||| |||| ||| ||||||| ||||| |||||||||||||| |||||||||||    ||||||||||||||||     
T  30989763 ttgattggttggtaaagggaagagatgagcgcacggtaatttctgtagtaggcatgggagggcaaggtaaaaccactcttacgaagaaagtttttgacaa 30989664  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    || | ||||||| |||||| |||| | |||||||||||||| |||||||||||    
T  30989663 caggaatgtcattggacactttgattgtcgtgtatggatcatagtgtctcaat 30989611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 22615692 - 22615565
Alignment:
Q  70 agagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgac 169  Q
    |||| ||||||| || |||||||| |||||||||||||| || ||||||||||| | |||||| |||||||| |||||||| ||    |||||| ||||     
T  22615692 agagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggacactttgat 22615593  T
Q  170 tatcgtgtatggatcacagtgtctcaat 197  Q
    | ||||||||||||||||||||||||||    
T  22615592 tgtcgtgtatggatcacagtgtctcaat 22615565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 18967439 - 18967325
Alignment:
Q  49 ttggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaag 148  Q
    ||||||||| ||||| ||  ||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||  |||| ||||| ||||| ||||    
T  18967439 ttggatggtgaaggggagagaagagggcactatcatctctgtggtaggaatgggagggcaaggaaaaacaactctagcaaagagagtttctgacaacaag 18967340  T
Q  149 gatgtcatcggacac 163  Q
    |||||||| ||||||    
T  18967339 gatgtcattggacac 18967325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 22621331 - 22621220
Alignment:
Q  86 tctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgactatcgtgtatggatca 185  Q
    |||||||||||||||||||| ||||||||| ||||||| | ||| || ||||| |||||||| || ||||| |||||| | || |||||||||||| |||    
T  22621331 tctgtggtaggaatgggaggacaaggaaaatccactcttgccaaaaaggttttcgacagcaaagaggtcatgggacacttcgaatatcgtgtatgggtca 22621232  T
Q  186 cagtgtctcaat 197  Q
    ||||||| ||||    
T  22621231 cagtgtcacaat 22621220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 22657522 - 22657372
Alignment:
Q  47 gattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagca 146  Q
    |||||| |||||||||||||   |||| |||||||  | ||||| || ||||||||||||||||||||||| ||||| |  || ||||||||||||||||    
T  22657522 gattggttggtaaagggaagatcagagcgcactgtcatatctgtcgtgggaatgggagggcaaggaaaaactactcttgctaaaaaagtttttgacagca 22657423  T
Q  147 aggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    | || ||  | |||||| |||| | |||||| |||||||||||||| ||||    
T  22657422 aagaggttgttggacactttgaatgtcgtgtttggatcacagtgtcacaat 22657372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 22208045 - 22208177
Alignment:
Q  62 ggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggac 161  Q
    ||||| ||||||  |||||| || || ||||| || |||||||||||||| ||||| ||||| | |||| |||||||||||||||| || || || |||     
T  22208045 ggaagaaaagagctcactgttgtctcggtggttgggatgggagggcaaggtaaaacaactcttgccaagcaagtttttgacagcaaagaggttattggat 22208144  T
Q  162 accttgactatcgtgtatggatcacagtgtctc 194  Q
    || |||| | |||||||||||||||||||||||    
T  22208145 actttgattgtcgtgtatggatcacagtgtctc 22208177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 22648612 - 22648470
Alignment:
Q  49 ttggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaag 148  Q
    |||| ||||| |||||||   |||| |||||||  | ||||||||||| |||||||||| ||||||||||||||| | ||  ||||| |||||||||||     
T  22648612 ttggttggtagagggaagatcagagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgccagaaaagtgtttgacagcaaa 22648513  T
Q  149 gatgtcatcggacaccttgactatcgtgtatggatcacagtgt 191  Q
    || ||    |||||| |||| | |||||||||||||| |||||    
T  22648512 gaggtagcgggacactttgaatttcgtgtatggatcaaagtgt 22648470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 22437045 - 22436996
Alignment:
Q  92 gtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttga 141  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||||    
T  22437045 gtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttga 22436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 22635911 - 22635863
Alignment:
Q  95 ggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgaca 143  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  22635911 ggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgaca 22635863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 22368320 - 22368272
Alignment:
Q  95 ggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgaca 143  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||||    
T  22368320 ggaatgggaggactgggaaaaaccactctagccaagaaagtttttgaca 22368272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 2749082 - 2749140
Alignment:
Q  89 gtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaa 147  Q
    ||||||||||||||||| | ||||||||||||||| | ||||  ||||||||| |||||    
T  2749082 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 2749140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 2807349 - 2807406
Alignment:
Q  84 tttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttga 141  Q
    |||| ||||||||||||||||| | ||||||||||||||| | ||||  |||||||||    
T  2807349 tttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga 2807406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 22431560 - 22431459
Alignment:
Q  95 ggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctc 194  Q
    ||||||||||| |  |||||||||||||||  ||||||||||||||||| |||    ||| |   |||| |||| | |||| ||||||||||||||||||    
T  22431560 ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacagtgtctc 22431461  T
Q  195 aa 196  Q
    ||    
T  22431460 aa 22431459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 2818644 - 2818700
Alignment:
Q  89 gtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagc 145  Q
    |||||||||||||| || | ||||||||||||||| | ||||  |||||||||||||    
T  2818644 gtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagc 2818700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 22358410 - 22358362
Alignment:
Q  95 ggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgaca 143  Q
    ||||||||||| |  ||||||||||||||||  ||||||||||||||||    
T  22358410 ggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgaca 22358362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 22468356 - 22468308
Alignment:
Q  95 ggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgaca 143  Q
    ||||||||||| |  |||||||||||| ||| |||||||||||||||||    
T  22468356 ggaatgggaggactgggaaaaaccactatagccaagaaagtttttgaca 22468308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 22632273 - 22632225
Alignment:
Q  95 ggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgaca 143  Q
    ||||||||||| |  || ||||||||||||| |||||||||||||||||    
T  22632273 ggaatgggaggactggggaaaaccactctagccaagaaagtttttgaca 22632225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 34989225 - 34989377
Alignment:
Q  45 ttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacag 144  Q
    |||||||| |||||||||||||   |||| |||||||  | ||||| || || |||||||||||||||||||||||||| |  || || |||||||| ||    
T  34989225 ttgattggctggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaaggtttttgatag 34989324  T
Q  145 caaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    ||| || ||  | |||||| |||| | ||||||||||||||||||||| ||||    
T  34989325 caaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaat 34989377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 34975379 - 34975542
Alignment:
Q  34 aaaaatattttttgattggatggtaaagggaaggaaagagggcactgtagtttctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaa 133  Q
    |||||||||  |||||||  |||||||||||||   |||| |||||||  | ||||| || || |||||||||||||||||||||||||| |  || ||     
T  34975379 aaaaatattgattgattgtttggtaaagggaagagtagagcgcactgtcatctctgtagttgggatgggagggcaaggaaaaaccactcttgctaaaaag 34975478  T
Q  134 gtttttgacagcaaggatgtcatcggacaccttgactatcgtgtatggatcacagtgtctcaat 197  Q
    |||||||| ||||| || ||  | |||||| |||| | ||||||||||||||||||||| ||||    
T  34975479 gtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaat 34975542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 34980211 - 34980322
Alignment:
Q  86 tctgtggtaggaatgggagggcaaggaaaaaccactctagtcaagaaagtttttgacagcaaggatgtcatcggacaccttgactatcgtgtatggatca 185  Q
    ||||| || ||||||||||||||||||||||  ||||| |  || ||||||||||| ||||| || ||  | |||||| |||| | ||||||||||||||    
T  34980211 tctgtagttggaatgggagggcaaggaaaaataactcttgctaaaaaagtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatca 34980310  T
Q  186 cagtgtctcaat 197  Q
    ||||||| ||||    
T  34980311 cagtgtcacaat 34980322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University