View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_16 (Length: 649)
Name: NF13763_high_16
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 2151403 - 2151051
Alignment:
| Q |
1 |
attttaactttgaacagatgttttttaaaattacattgctacatttgatttattaagatatgcctttaagagtctaagtttttcatggaactgagggaag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2151403 |
attttaactttgaacagatgttttttaaaattacattgctacatttgatttattaagatgtgcctttaagagtctaagtttttcatggaactgagggaag |
2151304 |
T |
|
| Q |
101 |
cttctatacatccattacaaagttcaagttcaattaatgaacatgatttcattcaaatcctaaagatgtgcaactgctctacaaactagagtaacaagga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151303 |
cttctatacatccattacaaagttcaagttcaattaatgaacatgatttcattcaaatcctaaagatgtgcaactgctctacaaactagagtaacaagga |
2151204 |
T |
|
| Q |
201 |
attgtctcccaacaagagttaatcttggtcgatgagaagtgacatgcccttcattgtgtccccttgctgttgatttcttgtcaccattttgttaattgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151203 |
attgtctcccaacaagagttaatcttggtcgatgagaagtgacatgcccttcattgtgtccccttgctgttgatttcttgtcaccattttgttaattgtt |
2151104 |
T |
|
| Q |
301 |
ggaataaagaatcatcactgtgaaatgtcattggaagattgatgcttcacccc |
353 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151103 |
ggaataaagaatcatcactgtgaaatgtcattggaagattgatgcttcacccc |
2151051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 353 - 561
Target Start/End: Original strand, 4824818 - 4825026
Alignment:
| Q |
353 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtggaccaatttcttgatgtcaaaagcaatgcggtggtatttttgaaattatagtga |
452 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
4824818 |
cactactagaaaaaagacatttaacatcaaggtattcacatcagtggaccaatttcttgatgtcaaaagcaacgcggtggcatttttgaaattatagtga |
4824917 |
T |
|
| Q |
453 |
actttgccaaaggatttcacttcagtggaaaaatacctgaagggagaaataattattaaggaattttgacatcagcggatagaatacctgaagggaaaag |
552 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4824918 |
actttgccaaaggatttcacatcagtggaaaaatacctgaagggagaaataattattaaagaattttgacatcagcggatagaatacctgaagggaaaag |
4825017 |
T |
|
| Q |
553 |
tctatcaca |
561 |
Q |
| |
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||||||||| |
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|
| T |
4825018 |
tctatcaca |
4825026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 362 - 550
Target Start/End: Complemental strand, 7709828 - 7709640
Alignment:
| Q |
362 |
aaaaaagacatttagcatcagggtattcacatcagtggaccaatttcttgatgtcaaaagcaatgcggtggtatttttgaaattatagtgaactttgcca |
461 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||||||| ||||||| ||||||||| |||||| ||||||| ||||| |||||||| || || |
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| T |
7709828 |
aaaaaagacatttaacatcagagatttcacatcagtggaccaattacttgatggcaaaagcaacacggtggcatttttgcaattaaagtgaactctgaca |
7709729 |
T |
|
| Q |
462 |
aaggatttcacttcagtggaaaaatacctgaagggagaaataattattaaggaattttgacatcagcggatagaatacctgaagggaaa |
550 |
Q |
| |
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| || |||| | ||||| || ||||||||||| || ||||||||||||| |||||||||||||||| |||| ||||| ||| |||||| |
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|
| T |
7709728 |
agggttttctcatcagttgagaaatacctgaaagggaaaataattattaatgaattttgacatcagcagatataatacatgaggggaaa |
7709640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 353 - 548
Target Start/End: Complemental strand, 17165854 - 17165660
Alignment:
| Q |
353 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtggaccaatttcttgatgtcaaaagcaatgcggtggtatttttgaaattatagtga |
452 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||||| ||||||||| ||||||| ||||||||| | ||||| ||||||| ||||| ||||| |
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| T |
17165854 |
cactactagaaaaaagacatttaacatcagagatttcacatcagcggaccaattacttgatgacaaaagcaacgtggtggcatttttgtaattaaagtga |
17165755 |
T |
|
| Q |
453 |
actttgccaaaggatttcacttcagtggaaaaatacctgaagggagaaataattattaaggaattttgacatcagcggatagaatacctgaaggga |
548 |
Q |
| |
|
||| || |||||| |||| | ||||| || |||||||||||||| |||||||||| || |||||||| ||||||| |||| ||||| ||| |||| |
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|
| T |
17165754 |
actctg-caaagggtttcccatcagttgagaaatacctgaaggggaaaataattatcaatgaattttggcatcagcagatataatacttgagggga |
17165660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 1381503 - 1381550
Alignment:
| Q |
353 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtgga |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||| |
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|
| T |
1381503 |
cactactagaaaaaagacatttaacatcagagttttcacatcagtgga |
1381550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 51741417 - 51741462
Alignment:
| Q |
353 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtg |
398 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
51741417 |
cactactagaaaaaagacatttgacatcagggttttcacatcagtg |
51741462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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