View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_166 (Length: 239)
Name: NF13763_high_166
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_166 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 51534525 - 51534716
Alignment:
| Q |
32 |
cttatatacaaatttttgctggttatggagaagaaaatatccatatacaaattgaatattcatcatgtgtaattctgaaaactaattcatcgaatattgt |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51534525 |
cttatatacaaatttttgctggttatggagaagaaaatatccatatacaaatcgaatattcatcatgtgtaattctgaaaactaattcatcggatattgt |
51534624 |
T |
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| Q |
132 |
gggacctaagcaagcaataaattctttttgagttttaggctttgtttggatggcaaaagaaattttaaggaaagaatgtaagaggaaagatt |
223 |
Q |
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| T |
51534625 |
gggacctaagcaagcaataaattctttttgagttttaggctttgtttggatggcaaactaaagcttaaggaaagaatgtaagaggaaagatt |
51534716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 39732123 - 39732066
Alignment:
| Q |
166 |
ttaggctttgtttggatggcaaaagaaattttaaggaaagaatgtaagaggaaagatt |
223 |
Q |
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| T |
39732123 |
ttaggctttgtttggctggccaaagaaagtttaaggaaagaatgtgagaggaaagatt |
39732066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 29006113 - 29006059
Alignment:
| Q |
165 |
tttaggctttgtttggatggcaaaagaaattttaaggaaagaatgtaagaggaaa |
219 |
Q |
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| T |
29006113 |
tttaggctttgtttggctggcaaaagaaagttcaagaaaagaatgtaagaggaaa |
29006059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 55290408 - 55290464
Alignment:
| Q |
166 |
ttaggctttgtttggatggcaaaagaaattttaaggaaagaatgtaagaggaaagat |
222 |
Q |
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||||||||||||||| |||||||| ||| || |||||||||||| |||||||||||| |
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| T |
55290408 |
ttaggctttgtttggctggcaaaaaaaagttcaaggaaagaatgcaagaggaaagat |
55290464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 27301725 - 27301682
Alignment:
| Q |
164 |
ttttaggctttgtttggatggcaaaagaaattttaaggaaagaa |
207 |
Q |
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||||||||||||||||||| | |||||||| ||||||||||||| |
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| T |
27301725 |
ttttaggctttgtttggatagtaaaagaaagtttaaggaaagaa |
27301682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 47116934 - 47116989
Alignment:
| Q |
168 |
aggctttgtttggatggcaaaagaaattttaaggaaagaatgtaagaggaaagatt |
223 |
Q |
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|||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
47116934 |
aggctttgtttgactggtcaaagaaagtttaaggaaagaatgtaagaggaaagatt |
47116989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 30674098 - 30674152
Alignment:
| Q |
168 |
aggctttgtttggatggcaaaagaaattttaaggaaagaatgtaagaggaaagat |
222 |
Q |
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||||||||||||| || | ||||||| |||||| ||||||||||||||||||||| |
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| T |
30674098 |
aggctttgtttggctgaccaaagaaagtttaagaaaagaatgtaagaggaaagat |
30674152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 39029104 - 39029049
Alignment:
| Q |
168 |
aggctttgtttggatggcaaaagaaattttaaggaaagaatgtaagaggaaagatt |
223 |
Q |
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|||| ||||||||||| |||||||| | ||||||||||| ||||||||||||||| |
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| T |
39029104 |
aggcattgtttggatgagaaaagaaagtataaggaaagaaagtaagaggaaagatt |
39029049 |
T |
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