View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_high_168 (Length: 237)
Name: NF13763_high_168
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_168 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26832707 - 26832927
Alignment:
| Q |
1 |
atgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832707 |
atgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcat |
26832806 |
T |
|
| Q |
101 |
tctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaacttaaccctatcattagtccattgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832807 |
tctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaacttaaccctatcattagtccattgac |
26832906 |
T |
|
| Q |
201 |
ttgctattaataattattaac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26832907 |
ttgctattaataattattaac |
26832927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 26785989 - 26786178
Alignment:
| Q |
1 |
atgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
26785989 |
atgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggcat |
26786088 |
T |
|
| Q |
101 |
tctacttgtaccaactcctgcattttttgtttgttcatttgccacaatcattcacaatcaccttttaatacaaacttaaccctatcattagtc |
193 |
Q |
| |
|
||| | |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||| |
|
|
| T |
26786089 |
tcttcctgtaccaactcctgcaattttt-tttgttcacttgccacaatcattcacaatcacc-tttaatacaaatttatccc-atcattagtc |
26786178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26791729 - 26791856
Alignment:
| Q |
1 |
atgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
26791729 |
atgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggcat |
26791828 |
T |
|
| Q |
101 |
tctacttgtaccaactcctgcatttttt |
128 |
Q |
| |
|
||| | ||||| |||||||||||||||| |
|
|
| T |
26791829 |
tcttcctgtacaaactcctgcatttttt |
26791856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 26822630 - 26822749
Alignment:
| Q |
1 |
atgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
26822630 |
atgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttgtttcgccatctacggcat |
26822729 |
T |
|
| Q |
101 |
tctacttgtaccaactcctg |
120 |
Q |
| |
|
||| | |||||||| ||||| |
|
|
| T |
26822730 |
tcttcctgtaccaattcctg |
26822749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 41546277 - 41546207
Alignment:
| Q |
23 |
gcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatct |
93 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | ||||||||||| || | ||||| ||||||||||| |
|
|
| T |
41546277 |
gcaccagctttgtaaccatttctattttcccttatctcatactttatgtttatgccttttcttctccatct |
41546207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 41917519 - 41917396
Alignment:
| Q |
5 |
ttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattcacacctttgcttctccatctacggcattcta |
104 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
41917519 |
ttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcatactttatattcactcctttgcttgcccatctttggcattcta |
41917420 |
T |
|
| Q |
105 |
cttgtaccaactcctgcatttttt |
128 |
Q |
| |
|
||| |||||||||| |||||||| |
|
|
| T |
41917419 |
gttgcaccaactcctacatttttt |
41917396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University