View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_high_188 (Length: 218)

Name: NF13763_high_188
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_high_188
NF13763_high_188
[»] chr6 (3 HSPs)
chr6 (1-218)||(33817178-33817395)
chr6 (8-62)||(22015253-22015307)
chr6 (5-41)||(1021127-1021163)
[»] chr5 (3 HSPs)
chr5 (5-62)||(14004331-14004388)
chr5 (5-96)||(39156656-39156747)
chr5 (28-74)||(11615299-11615345)
[»] chr4 (4 HSPs)
chr4 (9-96)||(51125859-51125946)
chr4 (6-57)||(35656476-35656527)
chr4 (8-62)||(10997345-10997399)
chr4 (5-95)||(32109833-32109922)
[»] chr2 (3 HSPs)
chr2 (8-62)||(44325361-44325415)
chr2 (5-39)||(42986095-42986129)
chr2 (8-41)||(2377913-2377946)
[»] chr7 (1 HSPs)
chr7 (6-41)||(4624515-4624550)
[»] chr1 (2 HSPs)
chr1 (7-62)||(15867620-15867675)
chr1 (5-41)||(34951808-34951844)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-62)||(53839-53893)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 33817395 - 33817178
Alignment:
Q  1 tacgctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatgatggtttgtaattggatga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  33817395 tacgctgtcaatcaatcataatcgttagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatataaatgatggtttataattggatga 33817296  T
Q  101 cacagtaaaaagttttactatgacagcgcatcaaaattaatctacagataaaatgttacattgattatatgctaaccagtgcctcgggcacattactatt 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33817295 cacggtaaaaagttttactatgacagcgcatcaaaattaatctagagttaaaatgttacattgattatatgctaaacagtgcctcgggcacattactatt 33817196  T
Q  201 aagaaaattgagtctaac 218  Q
    ||||||||||||||||||    
T  33817195 aagaaaattgagtctaac 33817178  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 22015307 - 22015253
Alignment:
Q  8 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 62  Q
    |||||||||||||||||| | ||||||||||||  | ||||||||||||||||||    
T  22015307 tcaatcaatcataatcgttatatcattaaaaatgtaagactttaatcatatctat 22015253  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1021163 - 1021127
Alignment:
Q  5 ctgtcaatcaatcataatcgtcagatcattaaaaata 41  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  1021163 ctgtcaattaatcataattgtcagatcattaaaaata 1021127  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 14004331 - 14004388
Alignment:
Q  5 ctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 62  Q
    ||||||||||||||||||||| |||||||| ||||||  |||||||||||||| ||||    
T  14004331 ctgtcaatcaatcataatcgtgagatcatttaaaataattgactttaatcataactat 14004388  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 39156747 - 39156656
Alignment:
Q  5 ctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatgatggtttgtaattgg 96  Q
    ||||||||||||||||| | |  ||||| ||||||||  |||||| |||||||  || || ||||||||||  ||||||||||||| |||||    
T  39156747 ctgtcaatcaatcataaccattggatcaataaaaatatttgacttcaatcatacataccttaaaagtcatacaaatgatggtttgtgattgg 39156656  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 11615299 - 11615345
Alignment:
Q  28 gatcattaaaaatacatgactttaatcatatctatctgaaaagtcat 74  Q
    ||||||||||||||  |||||||||||||||||| || |||||||||    
T  11615299 gatcattaaaaatatttgactttaatcatatctaactcaaaagtcat 11615345  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 51125859 - 51125946
Alignment:
Q  9 caatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatgatggtttgtaattgg 96  Q
    |||||||||||||||| || ||||||| |||||  ||||||||||||||| || || |||  |||||  |||||||||||||| ||||    
T  51125859 caatcaatcataatcgccaaatcattagaaatatttgactttaatcatatatacctaaaacatcatacaaatgatggtttgtatttgg 51125946  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 35656527 - 35656476
Alignment:
Q  6 tgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcata 57  Q
    |||| ||||||||||||||||| |||||||||||||  |||| |||||||||    
T  35656527 tgtcgatcaatcataatcgtcacatcattaaaaatatttgacattaatcata 35656476  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 10997399 - 10997345
Alignment:
Q  8 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 62  Q
    |||||||||||||||||| | |||||||||||   | ||||||||||||||||||    
T  10997399 tcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctat 10997345  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 32109833 - 32109922
Alignment:
Q  5 ctgtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctatctgaaaagtcatatgaatgatggtttgtaattg 95  Q
    ||||||||||||||||| |||  | ||||||||||||  | |||||||| ||||||| |  ||||||||||  ||||||||||||| ||||    
T  32109833 ctgtcaatcaatcataaccgtttggtcattaaaaatatttaactttaattatatcta-cataaaagtcatacaaatgatggtttgtgattg 32109922  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 44325415 - 44325361
Alignment:
Q  8 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 62  Q
    |||||||||||||||||| | ||||||||||||  | ||||||||||||||||||    
T  44325415 tcaatcaatcataatcgttatatcattaaaaatgtaagactttaatcatatctat 44325361  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 42986129 - 42986095
Alignment:
Q  5 ctgtcaatcaatcataatcgtcagatcattaaaaa 39  Q
    |||||| ||||||||||||||||||||||||||||    
T  42986129 ctgtcagtcaatcataatcgtcagatcattaaaaa 42986095  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 2377946 - 2377913
Alignment:
Q  8 tcaatcaatcataatcgtcagatcattaaaaata 41  Q
    |||||||||||||||||| |||||||||||||||    
T  2377946 tcaatcaatcataatcgtgagatcattaaaaata 2377913  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 4624550 - 4624515
Alignment:
Q  6 tgtcaatcaatcataatcgtcagatcattaaaaata 41  Q
    |||||||||||||||||||||||||||| |||||||    
T  4624550 tgtcaatcaatcataatcgtcagatcatcaaaaata 4624515  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 15867675 - 15867620
Alignment:
Q  7 gtcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 62  Q
    ||||||||||||||||||||| |||||||||| |   |||||||||||||| ||||    
T  15867675 gtcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataactat 15867620  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 34951844 - 34951808
Alignment:
Q  5 ctgtcaatcaatcataatcgtcagatcattaaaaata 41  Q
    |||||||||||||||| | ||||||||||||||||||    
T  34951844 ctgtcaatcaatcatattggtcagatcattaaaaata 34951808  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 53839 - 53893
Alignment:
Q  8 tcaatcaatcataatcgtcagatcattaaaaatacatgactttaatcatatctat 62  Q
    |||||||||||||||||| | |||||||||||   | ||||||||||||||||||    
T  53839 tcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctat 53893  T

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