View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_190 (Length: 214)
Name: NF13763_high_190
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_190 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 3373425 - 3373578
Alignment:
| Q |
47 |
gaagatatttggcatcatctgttcagacacaaaattggaaatcatttaatgaaagtttagacaattgacctgtcttaataagcatcctttgcctgttgaa |
146 |
Q |
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| T |
3373425 |
gaagatatttggcatcatctgttcagacacaaaattggaaatcatttaatgaaagtttagacaattgacctgtcttaataagcatcctttgcctgttgaa |
3373524 |
T |
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| Q |
147 |
acaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatat |
200 |
Q |
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| T |
3373525 |
acaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatat |
3373578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 3347229 - 3347304
Alignment:
| Q |
125 |
taagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatat |
200 |
Q |
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|||||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
3347229 |
taagcatccttttcttgttgaaacgatcttctcaagtagcttcctagaaaaagttctagcttcctcaagttcatat |
3347304 |
T |
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