View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_23 (Length: 602)
Name: NF13763_high_23
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 583
Target Start/End: Original strand, 53638705 - 53639262
Alignment:
| Q |
17 |
acaaggacactgttaaagcatgaaaaggaacgacgacagagaaccaacaaaaacacctatggccaaagaaatacagtagagcttcccacccaagtcagat |
116 |
Q |
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| T |
53638705 |
acaaggacactgttaaagcatgaaaaggaacgacgacagagaaccaacaaaaacacctatggccaaagaaatacagtagagcttcccatccaagtcagat |
53638804 |
T |
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| Q |
117 |
tcctcaagcaacgtaacaagtcattaaaaccattatgaaccattagcaacaagtcacat-------tcaacaaaacagattgttgttctatcgagaaaag |
209 |
Q |
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| T |
53638805 |
tcctcaagcaac-----aagtcattaaaaccatta----------gcaacaagtcacatagcagcatcaacaaaacagactgttgttcaatcgagaaaag |
53638889 |
T |
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| Q |
210 |
gttgtattgtatctatcctcatgtactatttttctctcaaattatttcttcaattcagagagtttggccaaattaaaatttattttatagtaaacaaata |
309 |
Q |
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| T |
53638890 |
gttgtattgtatctatcctcatgtactatttttctctcaaattatttcttcaattcagagagtttggccaaattaaaatttattttatagtaaacaaata |
53638989 |
T |
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| Q |
310 |
gaaactaattcttgcttcaaacaaaatagaaaggacttcgaaaagtacagcatgtgagcaaattaaaatagtatgttgcgcgcgaatcacatggataata |
409 |
Q |
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| T |
53638990 |
gaaactaattcttgcttcaaacaaaatagaaaggacttcgaaaagtacagcatgtgagcaaattaaaatagtatgttgcgcgcgaatcacatggataata |
53639089 |
T |
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| Q |
410 |
ttataatcattccttcatnnnnnnnnnctacttacaataatcatgtatgaagaagatatgtaacttaaacaacacatattgaatgaattttcccc--nnn |
507 |
Q |
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|| |||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53639090 |
tt---atcattcctttataaaaaaaaactacttataataatcatgtatgaagaagatatgtaacttaaacaacacatattgaatgaattttccccaaaaa |
53639186 |
T |
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| Q |
508 |
nnnnncacatgttgaatttcaaccgtaggttaatattgcatggacagttgtattagtataagtaagtaagtaacta |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53639187 |
aaaaacacatgttgaatttcaaccgtaggttaatattgcatggacagttgtattagtataagtaagtaactaacta |
53639262 |
T |
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