View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_24 (Length: 599)
Name: NF13763_high_24
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Complemental strand, 36813176 - 36812578
Alignment:
| Q |
1 |
atctagctaacagtattcatctcaacaagacaacgatacactcagtatcttagttgtaagtatgaaaaaagtcttgagtttttatttctaaataatatag |
100 |
Q |
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| T |
36813176 |
atctagctaacagtattcatctcaacaagacaacgatacactcactatcttagttgtaagtatgaaaaaaatcttgagtttttatttctaaataatatag |
36813077 |
T |
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| Q |
101 |
tcgatcgtcgttgaaatttctgattgattttaattactagtcaacggtgg-atcacctatgttatcaacatatatgtttttctcaccatatgtccgaagt |
199 |
Q |
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| T |
36813076 |
tcgatcgtcgttgaaatttctgattgattttaattactagtcaacggtgggatcacctatgttatcaacatatatgtttttctcaccatatgtccgaagt |
36812977 |
T |
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| Q |
200 |
agcatgtcgatccnnnnnnncgtacatttccttacttggctgaaaaagtatccaaaaactaagatattttactaacaaaacgatcaatataattatttga |
299 |
Q |
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| T |
36812976 |
agcatgtcgatccaaaaaaacgtacatttccttacttggctgaaaaagtatccaaaaactaagatattttactaacaaaacgatcaatataatt-tttga |
36812878 |
T |
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| Q |
300 |
cgcgagagaagtgctagcaagaccaaaagcgtattttattgccaatcctcttcaacattcacagaaggatgagaggacaccctatgctagttttctttca |
399 |
Q |
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| T |
36812877 |
cgcgagagaagtgctagcaagaccaaaagcgtattttattgccaatcctcttcaacattcacagaaggatgagaggacaccctatgctagttttctttca |
36812778 |
T |
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| Q |
400 |
ttttgaactaaccggtttcaacgaggctgataaatacatccatctaagaaaagctcgatatggtaaggtgtttgttcataacttcaacgagtgtataact |
499 |
Q |
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| T |
36812777 |
ttttgaactaaccggtttcaacgaggctgataaatacatccatcaaagaaaagctctatatgttaaggtgtttgtacataacttcaacgagtggataact |
36812678 |
T |
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| Q |
500 |
tcaaatgcttttgaagcttcattttgaaattatttagttccaacagtggtgacttcatcatctcaacatcttttctcattacttttatctcctgattcat |
599 |
Q |
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| T |
36812677 |
tcaaatgcttttgaagcttcattttgcaagtatttagttccagcagttgtgacttcatcatctcaacatcttttctcattacttttatctcctgattcat |
36812578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 9176797 - 9176841
Alignment:
| Q |
229 |
ccttacttggctgaaaaagtatccaaaaactaagatattttacta |
273 |
Q |
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| T |
9176797 |
ccttacttggctgaaaaagtatccaaaaactatgatctttcacta |
9176841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 7107085 - 7107014
Alignment:
| Q |
48 |
tcttagttgtaagtatgaaaaaagtcttgagtttttatttctaaataatatagtcgatcgtcgttgaaattt |
119 |
Q |
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| T |
7107085 |
tcttagttgtaagtatgagaaatgtcataagtcattatttctgaataatatcgttggtcgtcgttgaaattt |
7107014 |
T |
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