View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_25 (Length: 598)
Name: NF13763_high_25
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 46 - 315
Target Start/End: Original strand, 16370743 - 16371012
Alignment:
| Q |
46 |
aatagatagatgaataaaaataagatattacttacttgaaagcgtgtgagatcagatcctggacttacattcttgaataaacttaatagtcgttgcaaaa |
145 |
Q |
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| T |
16370743 |
aatagatagatgaataaaaataagatattacttacttgaaagcgtgtgagatcagatcctgggcgtacattcttgaataaacttaatagtcgttgcaaaa |
16370842 |
T |
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| Q |
146 |
gattaggagccctataagactcttctgaatctgattcttttcctagttgcaatggcttagtgagcataannnnnnnctcttctttgtttatctgcacaac |
245 |
Q |
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| T |
16370843 |
gattaggagccctataagactcttctgaatctgattcttttgctagttgcaatggcttagtgagcataatttttttctcttctttgtttatctgcacaac |
16370942 |
T |
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| Q |
246 |
caccatttcttttgttaattattttatgaaaaacttaattaccctctaatctcaattagtgtggtatgag |
315 |
Q |
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| T |
16370943 |
caccatttcttttgttaattattttatgaaaaacttaattaccctctaatctcaattagtgtggtatgag |
16371012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 461 - 588
Target Start/End: Original strand, 16371036 - 16371163
Alignment:
| Q |
461 |
taaaaagaatatatgaaaatgttgcatgctatcacataaaattgttatatttttctaaaatgnnnnnnnnnnnnnnnntcttaacattctcctgtaacag |
560 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
16371036 |
taaaatgaatatatgaaaatgttgcatgctatcacataaaattgttatatttttctaaaatgaaaaaaaaataaaaaatcctaacattctcctgtaacag |
16371135 |
T |
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| Q |
561 |
gaagtgtttttcttttaaaatgatgatg |
588 |
Q |
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| T |
16371136 |
gaagtgtttttcttttaaaatgatgatg |
16371163 |
T |
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