View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_32 (Length: 545)
Name: NF13763_high_32
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 28541845 - 28541407
Alignment:
| Q |
19 |
caaggttggtccggtgatgtacgacttaaaattaaaaagtgtgctcctcatcatgtttctggttcatattcttcatacagtaataattcgcatgttaaac |
118 |
Q |
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| T |
28541845 |
caaggttgtttcggtgatgtacgacttaaaattaaagagtgtgttcctcatcatgtttctggttcatattcttcatacagtaataattctcatgttaagc |
28541746 |
T |
|
| Q |
119 |
ttattcgtatatgactttgttctgatttcaattatcctccctcgagtagatgattggattagtccacaaattagatctctatattgtatatagagtttct |
218 |
Q |
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| T |
28541745 |
ttattcgtatatgactttgttctgacttcaattatcctcccttcagtggatgattggattagtccacgaattagatctctacattgtatatagagtttct |
28541646 |
T |
|
| Q |
219 |
tttataagttattccactaaaaataaatagttttattggcaataataatggacaactaa---nnnnnnnnnggttacaataatagacaactaaatgaata |
315 |
Q |
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| T |
28541645 |
ttaataagttattccactaaaaataaatagttttattggcaataataatagacaactaattttttttgttttgttacaataatagacaactaaatgaata |
28541546 |
T |
|
| Q |
316 |
gatgcatgttttcatgtggctctttcgttcttttgttggcaattgagtattgctgaaaaataaatgaaaaatccctacaaaagtttcctcttctctatag |
415 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28541545 |
gatgcatgttttcacgtggctctttcgttcttttgttggcaattgagtattgctgaaaaataaatgaaaaatccctacaaaagtttcctcttctctatag |
28541446 |
T |
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| Q |
416 |
tcaaaataggacaaacttcatttgcacttatttttctct |
454 |
Q |
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| T |
28541445 |
tcaaaataggaaaaacttcatttgcacttatttttctct |
28541407 |
T |
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