View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_36 (Length: 537)
Name: NF13763_high_36
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Original strand, 40998229 - 40998744
Alignment:
| Q |
11 |
atcatcacttagattgatcaattcgatcttattttcattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttccccc |
110 |
Q |
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| T |
40998229 |
atcatcacttagattgatcaattcgatcttatttttattaccttgctattgtctatttatcgtgattcaaacacaccatggcaaacaactctcttccccc |
40998328 |
T |
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| Q |
111 |
actctcaaccctcgccgtccccatttgaaaactcccataatcaagtgtttggcaagctaattcaattttacggaagtga---cacattttgaaaacttaa |
207 |
Q |
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| T |
40998329 |
actctcaaccctcgccgtccccatttgaaaactcccataattaagtgtttggtatgctaattcaattttacggaggtgatgacacattttgaaaacttaa |
40998428 |
T |
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| Q |
208 |
gttgacccaagggccaagagccaagcaatccatccaagactcaaattcatcatatttgtatggacgaaaaacacattttaacctttttataattatacac |
307 |
Q |
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| T |
40998429 |
gttgacccaagggccaagagccaagcaatccatccaagactcaaactcatcatatttgtaaggaccaaaaacacattttaacctttttataattatacag |
40998528 |
T |
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| Q |
308 |
aacacacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttacgct |
407 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40998529 |
aacgcacccctattggtggtttgggcatctagcaaatatagtttgagtagacagatcaatttacacaaaagattatataattggctccactacttacgct |
40998628 |
T |
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| Q |
408 |
ctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtagaaatatgtgtggc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40998629 |
ctgtttgggtataataatgattgaaatctggaaatcacatctagagatgagaaatttatctcaatgacagcaataacaagcacgtagaaatatgtgtggc |
40998728 |
T |
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| Q |
508 |
atgcagccaagatgtg |
523 |
Q |
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|||||||||||||||| |
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| T |
40998729 |
atgcagccaagatgtg |
40998744 |
T |
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