View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_high_38 (Length: 527)
Name: NF13763_high_38
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_38 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 3080919 - 3080419
Alignment:
| Q |
19 |
cctttatcgtttttctgaaaccctattcattcttcctatgaatatcatcaaaccaaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtgcact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080919 |
cctttatcgtttttctgaaaccctattcattcttcctatgaatatcatcaaaccaaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtgcact |
3080820 |
T |
|
| Q |
119 |
agagagtgtgttttagctccttattttccggccgatgaaccaaagatgttcggcaatgctcatcgtttgtttggtgtttcaaacatacagaagatactaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080819 |
agagagtgtgttttagctccttattttccggccgatgaaccaaagatgttcggcaatgctcatcgtttgtttggtgtttcaaacatacagaagatactaa |
3080720 |
T |
|
| Q |
219 |
acgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080719 |
acgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgt |
3080620 |
T |
|
| Q |
319 |
tattcatatgtatgcaggtatgataaataagtcttctaaagagttagatcaattaaaatggctattagcttattgtaagcaaaacaaccatttacaacaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3080619 |
tattcatatgtatgcaggtatgataaataagtcttctaaagagttagatcaattaaaatggctattagcttattgtaagcaaaacaaccatttacaacaa |
3080520 |
T |
|
| Q |
419 |
caaaatctttatttctccatagcttctactagttttcaagtgtttaataattatggtgatgttggtaattattatcacaatagtgaaaataatatgatga |
518 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3080519 |
caaaatctttattcctccataccttctactagttttcaagtgtttaacaattatggtgatgttggtaattattatcaaaatagtgaaaataatatgatga |
3080420 |
T |
|
| Q |
519 |
t |
519 |
Q |
| |
|
| |
|
|
| T |
3080419 |
t |
3080419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 73 - 322
Target Start/End: Complemental strand, 325228 - 324980
Alignment:
| Q |
73 |
aaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtgcactagagagtgtgttttagctccttattttccggccgatgaaccaaagatgttcggc |
172 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| ||| ||| || |||||||||||||||||| |||||| ||||||| ||| | | | |
|
|
| T |
325228 |
aaacaaggcttgtgcagcctgcaaatatcaaagaagaaagtgtactccagattgccctttagctccttattttccagccgataaaccaaa-atgcttgcc |
325130 |
T |
|
| Q |
173 |
aatgctcatcgtttgtttggtgtttcaaacatacagaagatactaaacgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttg |
272 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||| ||||| ||||| ||| | |||| | ||| | ||||||||||||||| || |||||| ||| |
|
|
| T |
325129 |
aatgcacatcgtttgtttggtatttccaacatggtgaagacgctaaagtctattgatgatgatcatcataaagatgaagcaatgaagtcgattatttttg |
325030 |
T |
|
| Q |
273 |
agtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
322 |
Q |
| |
|
|||| |||| ||||||| | ||||| |||||||||||||||| ||||| |
|
|
| T |
325029 |
agtcagaaatgcgtgcaagatacccaagtcatggatgtcttggtcttatt |
324980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 56 - 325
Target Start/End: Original strand, 3104219 - 3104488
Alignment:
| Q |
56 |
atgaatatcatcaaaccaaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtgcactagagagtgtgttttagctccttattttccggccgatg |
155 |
Q |
| |
|
||||||||||| ||| ||||||| | |||||||||||||||||||||||| |||||||| | | ||| ||| |||||||||||| ||||| | ||| |
|
|
| T |
3104219 |
atgaatatcatgaaatcaaacaaagtttgtgcagcatgcaagtatcaaaggagaaagtgtcccaaagattgtcctttagctccttactttccaactgata |
3104318 |
T |
|
| Q |
156 |
aaccaaagatgttcggcaatgctcatcgtttgtttggtgtttcaaacatacagaagatactaaacgaaattaaggatggtggtcaaagagatgaagcaat |
255 |
Q |
| |
|
||||||| | ||| | ||||| ||| ||||||||||||||| |||||| |||| ||||||| | ||||| || | | ||||| || ||||| |
|
|
| T |
3104319 |
aaccaaaaaggtttgacaatgttcacaatttgtttggtgtttccaacatagtgaagttactaaagaatattaaagacaacgatgtaagagccgatgcaat |
3104418 |
T |
|
| Q |
256 |
gaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttattcat |
325 |
Q |
| |
|
| | ||||||||| |||||||| | ||||||||| | ||||| ||||||||||| |||||||||||||| |
|
|
| T |
3104419 |
ggattcaattatttttgagtcggatattcgtgcagaattccccgttcatggatgtgttggtgttattcat |
3104488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 322
Target Start/End: Complemental strand, 3094182 - 3093939
Alignment:
| Q |
76 |
caaggcttgtgcagcatgcaagtatcaaagaagaaagtgcactagagagtgtgttttagctccttattttccggccgatgaaccaaagatgttcggcaat |
175 |
Q |
| |
|
||||||||||||| | ||||| | |||||||||||||| | | ||| ||| || |||||||||||||||| || ||| ||||| | |||||||||| |
|
|
| T |
3094182 |
caaggcttgtgcatcttgcaaattccaaagaagaaagtgttcaaaagattgtcttctagctccttattttcctgctgataaaccacaagtgttcggcaac |
3094083 |
T |
|
| Q |
176 |
gctcatcgtttgtttggtgtttcaaacatacagaagatactaaacgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttgagt |
275 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||| |||| || ||||||| | | |||||||| |||||||||||||||||| |||||| |
|
|
| T |
3094082 |
gctcatcgtttgttcggtgtttccaacatatcgaagatattaaagcaagttaagga---agaatatagagatgatgcaatgaaatcaattattattgagt |
3093986 |
T |
|
| Q |
276 |
cgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
322 |
Q |
| |
|
|| | || ||||| | ||||| || ||||||||||| ||||||| |
|
|
| T |
3093985 |
cggatatgcgtgctcaattccctgttggtggatgtcttgatgttatt |
3093939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 56 - 322
Target Start/End: Original strand, 36914978 - 36915244
Alignment:
| Q |
56 |
atgaatatcatcaaaccaaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtgcactagagagtgtgttttagctccttattttccggccgatg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||| ||||||||| |
|
|
| T |
36914978 |
atgaatatcatcaaaccaaacaaggcttgtgcagcatgcaagtatcaaagaagaaagtgttcaagtgagtgtcctttagctccttatttcccggccgata |
36915077 |
T |
|
| Q |
156 |
aaccaaagatgttcggcaatgctcatcgtttgtttggtgtttcaaacatacagaagatactaaacgaaattaaggatggtggtcaaagagatgaagcaat |
255 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||||||||| |||||||| | ||||||||| || || ||||||| || ||||| ||||| || || |
|
|
| T |
36915078 |
aaccaaaaatgttcagcaacgctcatcgtttgtttggtgtttccaacatacaaaggatactaaaagatatcaaggatgatgatcaaaaagatgttgcgat |
36915177 |
T |
|
| Q |
256 |
gaaatcaattattgttgagtcgaaaattcgtgcaaatttcccaattcatggatgtcttggtgttatt |
322 |
Q |
| |
|
|| ||| || ||| |||||||| | ||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
36915178 |
gagatccataattattgagtcggatattcgtgcaaaatttcccgttcatggatgtcttggtgttatt |
36915244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 82 - 369
Target Start/End: Original strand, 41121945 - 41122232
Alignment:
| Q |
82 |
ttgtgcagcatgcaagtatcaaagaagaaagtgcactagagagtgtgttttagctccttattttccggccgatgaaccaaagatgttcggcaatgctcat |
181 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || | || | |||||||||||||||||| |||||| ||||| | || ||| ||| |||||| |
|
|
| T |
41121945 |
ttgtgcagcatgcaaatatcaaagaagaaagtgttctccaagttgcgatttagctccttattttccagccgataaaccagaaatcttctacaaggctcat |
41122044 |
T |
|
| Q |
182 |
cgtttgtttggtgtttcaaacatacagaagatactaaacgaaattaaggatggtggtcaaagagatgaagcaatgaaatcaattattgttgagtcgaaaa |
281 |
Q |
| |
|
||||||||||||||||| ||||| |||||| ||||| | ||| | |||| || || |||||||||||||||||||||||| |||||||| | | |
|
|
| T |
41122045 |
cgtttgtttggtgtttccaacatggtgaagatgctaaagaatattgatgatgaacatctaaaagatgaagcaatgaaatcaattatctttgagtcggata |
41122144 |
T |
|
| Q |
282 |
ttcgtgcaaatttcccaattcatggatgtcttggtgttattcatatgtatgcaggtatgataaataagtcttctaaagagttagatca |
369 |
Q |
| |
|
| ||||||| ||||| | ||||||||| ||||||||||||||||| | ||| ||| |||| |||||| | | ||||||||||| |
|
|
| T |
41122145 |
tgcgtgcaagattccctgctactggatgtctcggtgttattcatatgtacggaggcatgttaaagaagtctgttgatgagttagatca |
41122232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University