View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_high_50 (Length: 498)

Name: NF13763_high_50
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_high_50
NF13763_high_50
[»] chr8 (30 HSPs)
chr8 (101-303)||(4350691-4350896)
chr8 (132-300)||(34141959-34142127)
chr8 (13-124)||(4350930-4351041)
chr8 (132-320)||(22930256-22930444)
chr8 (357-480)||(4350515-4350632)
chr8 (177-320)||(13580364-13580507)
chr8 (176-310)||(26835610-26835744)
chr8 (183-315)||(28376643-28376774)
chr8 (133-310)||(22486611-22486787)
chr8 (229-320)||(13236214-13236305)
chr8 (177-320)||(9191180-9191317)
chr8 (218-305)||(35481023-35481111)
chr8 (234-310)||(43872544-43872620)
chr8 (204-315)||(31277900-31278007)
chr8 (145-234)||(13236111-13236201)
chr8 (256-310)||(21347520-21347574)
chr8 (230-299)||(18987198-18987267)
chr8 (192-320)||(31383469-31383597)
chr8 (177-287)||(32646618-32646726)
chr8 (198-320)||(12181824-12181942)
chr8 (198-320)||(12426252-12426370)
chr8 (363-394)||(13580289-13580320)
chr8 (245-320)||(41849429-41849504)
chr8 (173-269)||(4311516-4311613)
chr8 (357-402)||(34142212-34142257)
chr8 (198-315)||(7255401-7255519)
chr8 (185-217)||(24606773-24606805)
chr8 (236-308)||(26801891-26801962)
chr8 (183-219)||(32349322-32349358)
chr8 (183-219)||(32365983-32366019)
[»] chr4 (29 HSPs)
chr4 (133-320)||(23869983-23870170)
chr4 (178-310)||(36071573-36071705)
chr4 (133-315)||(29118407-29118590)
chr4 (133-310)||(7853231-7853408)
chr4 (135-310)||(3643161-3643334)
chr4 (157-302)||(2113799-2113944)
chr4 (178-287)||(15986909-15987018)
chr4 (162-320)||(12320368-12320527)
chr4 (184-282)||(4596503-4596601)
chr4 (183-320)||(5627482-5627614)
chr4 (203-320)||(43515863-43515980)
chr4 (198-310)||(7102144-7102255)
chr4 (173-272)||(55147880-55147979)
chr4 (199-310)||(35372126-35372230)
chr4 (219-272)||(40807924-40807977)
chr4 (198-304)||(41442475-41442578)
chr4 (137-225)||(55236220-55236309)
chr4 (194-302)||(25779666-25779774)
chr4 (183-251)||(47059676-47059744)
chr4 (183-251)||(47082058-47082126)
chr4 (231-289)||(29369934-29369992)
chr4 (197-302)||(53178749-53178852)
chr4 (192-241)||(38087654-38087703)
chr4 (177-241)||(6137184-6137248)
chr4 (183-227)||(25790449-25790493)
chr4 (195-302)||(46443812-46443919)
chr4 (257-310)||(55147686-55147739)
chr4 (177-217)||(28477202-28477242)
chr4 (262-302)||(40807870-40807910)
[»] chr6 (25 HSPs)
chr6 (134-315)||(12174257-12174438)
chr6 (194-305)||(9815693-9815804)
chr6 (145-290)||(13229255-13229401)
chr6 (133-320)||(35121953-35122144)
chr6 (157-320)||(31787777-31787938)
chr6 (195-315)||(34573197-34573319)
chr6 (138-310)||(10668897-10669066)
chr6 (198-302)||(34540884-34540988)
chr6 (249-320)||(33344873-33344944)
chr6 (183-279)||(34969382-34969478)
chr6 (183-285)||(33607102-33607204)
chr6 (161-241)||(4337976-4338056)
chr6 (199-299)||(31153664-31153764)
chr6 (250-305)||(34329844-34329899)
chr6 (196-274)||(3359547-3359625)
chr6 (161-224)||(33344760-33344823)
chr6 (189-286)||(33871052-33871145)
chr6 (194-251)||(6274005-6274063)
chr6 (358-392)||(31787975-31788009)
chr6 (172-320)||(11274532-11274675)
chr6 (178-248)||(31236971-31237045)
chr6 (178-248)||(31246347-31246421)
chr6 (245-289)||(7544970-7545014)
chr6 (363-399)||(33344988-33345024)
chr6 (363-399)||(35121874-35121910)
[»] chr7 (28 HSPs)
chr7 (175-320)||(35812592-35812738)
chr7 (132-305)||(21129348-21129521)
chr7 (215-310)||(26912345-26912440)
chr7 (136-305)||(9429358-9429526)
chr7 (171-320)||(26914349-26914497)
chr7 (236-320)||(3351119-3351203)
chr7 (199-305)||(3940672-3940778)
chr7 (133-310)||(21828097-21828273)
chr7 (209-320)||(42335951-42336062)
chr7 (192-305)||(40351788-40351902)
chr7 (165-302)||(13431688-13431825)
chr7 (183-287)||(33480529-33480633)
chr7 (204-296)||(12177813-12177907)
chr7 (198-305)||(22318685-22318791)
chr7 (132-240)||(15134537-15134645)
chr7 (211-320)||(26448382-26448495)
chr7 (248-315)||(30095750-30095817)
chr7 (159-241)||(30095845-30095927)
chr7 (231-320)||(15133313-15133402)
chr7 (184-251)||(21292805-21292872)
chr7 (165-239)||(21136094-21136167)
chr7 (183-233)||(37996495-37996545)
chr7 (198-292)||(32982336-32982432)
chr7 (197-248)||(31329665-31329716)
chr7 (244-310)||(48008596-48008661)
chr7 (363-399)||(30095679-30095715)
chr7 (262-302)||(36066177-36066217)
chr7 (178-234)||(49164858-49164914)
[»] chr1 (28 HSPs)
chr1 (136-320)||(1240366-1240554)
chr1 (175-286)||(8246760-8246869)
chr1 (133-320)||(23897908-23898088)
chr1 (192-315)||(33735761-33735884)
chr1 (133-315)||(23935124-23935299)
chr1 (134-305)||(10976139-10976308)
chr1 (177-315)||(29664171-29664307)
chr1 (229-320)||(35405368-35405459)
chr1 (192-300)||(1153751-1153858)
chr1 (223-310)||(15103063-15103150)
chr1 (195-320)||(3265472-3265596)
chr1 (193-287)||(4626570-4626662)
chr1 (197-307)||(16141536-16141645)
chr1 (136-222)||(22667683-22667769)
chr1 (256-305)||(49762471-49762520)
chr1 (135-251)||(45385311-45385427)
chr1 (249-315)||(22667206-22667272)
chr1 (172-315)||(35204230-35204369)
chr1 (134-287)||(34298990-34299147)
chr1 (160-234)||(40859-40933)
chr1 (158-220)||(35405285-35405346)
chr1 (219-272)||(34258917-34258970)
chr1 (208-296)||(35384135-35384224)
chr1 (246-302)||(38742443-38742499)
chr1 (209-277)||(52805908-52805976)
chr1 (183-233)||(9422290-9422340)
chr1 (177-251)||(20756663-20756735)
chr1 (200-248)||(30717893-30717941)
[»] scaffold0531 (1 HSPs)
scaffold0531 (195-305)||(9699-9809)
[»] chr5 (19 HSPs)
chr5 (133-315)||(3193533-3193715)
chr5 (183-301)||(16570521-16570639)
chr5 (174-303)||(12263669-12263800)
chr5 (134-310)||(20870571-20870743)
chr5 (183-310)||(32257701-32257828)
chr5 (197-315)||(502805-502920)
chr5 (166-304)||(3596934-3597071)
chr5 (132-302)||(18600127-18600292)
chr5 (236-304)||(7886634-7886702)
chr5 (197-305)||(16569321-16569429)
chr5 (186-249)||(7887264-7887327)
chr5 (223-310)||(18626684-18626771)
chr5 (198-320)||(25034359-25034480)
chr5 (192-241)||(10325717-10325766)
chr5 (192-302)||(39542405-39542514)
chr5 (358-402)||(20870791-20870835)
chr5 (198-289)||(8934060-8934149)
chr5 (197-239)||(36161044-36161086)
chr5 (365-394)||(25034283-25034312)
[»] chr3 (21 HSPs)
chr3 (133-320)||(11383528-11383716)
chr3 (131-310)||(15670852-15671031)
chr3 (197-320)||(33510103-33510226)
chr3 (190-316)||(2758068-2758194)
chr3 (197-315)||(54417033-54417151)
chr3 (232-320)||(27538791-27538879)
chr3 (168-243)||(27541151-27541226)
chr3 (208-315)||(33682673-33682780)
chr3 (192-284)||(19149892-19149984)
chr3 (132-260)||(52706727-52706855)
chr3 (245-320)||(47000872-47000946)
chr3 (175-315)||(168697-168834)
chr3 (229-320)||(11365079-11365170)
chr3 (172-315)||(17713251-17713390)
chr3 (172-315)||(19014480-19014619)
chr3 (194-280)||(39838466-39838550)
chr3 (177-302)||(8266618-8266744)
chr3 (171-248)||(42417901-42417977)
chr3 (358-402)||(27538709-27538753)
chr3 (223-289)||(7741724-7741790)
chr3 (357-394)||(11383751-11383788)
[»] chr2 (30 HSPs)
chr2 (168-315)||(5163763-5163910)
chr2 (175-305)||(30257801-30257932)
chr2 (197-310)||(28556621-28556734)
chr2 (193-310)||(38561838-38561954)
chr2 (169-302)||(40876949-40877082)
chr2 (195-305)||(28148887-28148996)
chr2 (191-292)||(1241111-1241212)
chr2 (236-305)||(36186631-36186700)
chr2 (183-310)||(17271276-17271406)
chr2 (161-305)||(16547626-16547772)
chr2 (135-218)||(16647942-16648025)
chr2 (200-315)||(18829984-18830100)
chr2 (236-320)||(37912332-37912416)
chr2 (198-289)||(36506909-36507000)
chr2 (232-310)||(16646975-16647053)
chr2 (136-305)||(2887046-2887217)
chr2 (183-286)||(18197324-18197426)
chr2 (250-320)||(4206345-4206415)
chr2 (183-241)||(4206647-4206705)
chr2 (190-248)||(14951642-14951700)
chr2 (176-277)||(15925456-15925559)
chr2 (195-239)||(28226833-28226877)
chr2 (132-224)||(37911367-37911459)
chr2 (191-318)||(35280938-35281068)
chr2 (197-273)||(6621319-6621395)
chr2 (229-305)||(34345961-34346036)
chr2 (175-285)||(38134049-38134159)
chr2 (198-243)||(33819217-33819262)
chr2 (226-302)||(44157246-44157320)
chr2 (185-241)||(34909424-34909480)
[»] scaffold0777 (1 HSPs)
scaffold0777 (136-315)||(5785-5963)
[»] scaffold0001 (1 HSPs)
scaffold0001 (159-289)||(65000-65132)
[»] scaffold0003 (1 HSPs)
scaffold0003 (198-286)||(327934-328020)
[»] scaffold1173 (2 HSPs)
scaffold1173 (249-305)||(380-436)
scaffold1173 (361-393)||(493-525)
[»] scaffold0527 (2 HSPs)
scaffold0527 (263-305)||(1711-1753)
scaffold0527 (263-305)||(9774-9816)
[»] scaffold1702 (1 HSPs)
scaffold1702 (199-300)||(320-421)
[»] scaffold0128 (1 HSPs)
scaffold0128 (199-271)||(18557-18629)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 101 - 303
Target Start/End: Complemental strand, 4350896 - 4350691
Alignment:
Q  101 ttgcatgacatttaagatattttggatgtgttcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  4350896 ttgcatgacatttaagatattttggatgtgttcaggggtggccctgagggcgggcacgaggggcggtagccctgggcaccacttttttagaggcaccaaa 4350797  T
Q  201 attattatttttatttagtagttagtactatatagata---tatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    ||||||||||||||||||||||||||| ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4350796 attattatttttatttagtagttagtattatatagatatattatttttttttaattcgctttggttaattctattgaaaatatatttttatataactttg 4350697  T
Q  298 attata 303  Q
    ||||||    
T  4350696 attata 4350691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 132 - 300
Target Start/End: Original strand, 34141959 - 34142127
Alignment:
Q  132 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 231  Q
    |||||||||||| ||||||| ||| ||||| |||| |||| | ||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  34141959 tcaggggtggccctgagggcaggcgcgaggagcggcagcccagggcaccactttgttaggggcaccaaaactattatttttatttagtagttagtactat 34142058  T
Q  232 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgatt 300  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  34142059 atagatatatttctttttaatccgctttgattaattctattgaaaatatattttcagataactttgatt 34142127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 4351041 - 4350930
Alignment:
Q  13 agaacacatgcatgcacgacattgacaaagtggtggcatagggacacgagtagctttcattttttccattggtgagaatatcatcatattgcatgacatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  4351041 agaacacatgcatgcacgacattgacaaagtggtggcatagggacacgagtagctttcattttttccattggtgagaatatcatcatattgtatgatatt 4350942  T
Q  113 taagatattttg 124  Q
    ||||||||||||    
T  4350941 taagatattttg 4350930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 132 - 320
Target Start/End: Original strand, 22930256 - 22930444
Alignment:
Q  132 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 231  Q
    |||||||| | | ||||||||||| | |||||||  || | | ||||||| ||||| || |||||||||||||| ||||||| ||| |||||||||||||    
T  22930256 tcaggggttgtcctgagggcgggcgcaaggggcgacagtccagggcaccattttttcaggggcaccaaaattataatttttacttaatagttagtactat 22930355  T
Q  232 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  22930356 atagatatatatctttttaattcgctttgattaattctattgaaaaaatatttttagataactttgattataaatgaatattttacaac 22930444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 357 - 480
Target Start/End: Complemental strand, 4350632 - 4350515
Alignment:
Q  357 gggtacaatttattgtttcgtccaggacaccaaaaatcctaggaccagccgtggatctggatgtgttcttaacctttttcttctttcaagtttgggctat 456  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  4350632 gggtacaatttattgtttcgtccaggacacgaaaaatcctaggaccagcc------ctggatgtgttcttaacctttttcttctttcaagtttgggctat 4350539  T
Q  457 ggagcattttgaggacatatgtcc 480  Q
    ||||||||||||||||||||||||    
T  4350538 ggagcattttgaggacatatgtcc 4350515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 177 - 320
Target Start/End: Complemental strand, 13580507 - 13580364
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 276  Q
    ||||| |||||||| |||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13580507 caccatttttttaggggcaccaaaattattatttttacttaatagttagtattatataaatatatttctttttaattcgctttgattaattctattgaaa 13580408  T
Q  277 atatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||||||| ||||||||| ||||||| |||| |||| ||||    
T  13580407 atatatttttaaataactttggttataaatgaatattttgcaac 13580364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 26835744 - 26835610
Alignment:
Q  176 gcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaa 275  Q
    |||||| |||||||| |||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||  ||||  ||||||||||||||    
T  26835744 gcaccatttttttaggggcaccaaaattattatttttacttaatagttagtacaatataaatatatttctttttaattttcttttattaattctattgaa 26835645  T
Q  276 aatatatttttagataactttgattataaacgaat 310  Q
    |||||||||||||| ||||||||||||||| ||||    
T  26835644 aatatatttttagagaactttgattataaatgaat 26835610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 28376643 - 28376774
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| | | | | ||||||||    
T  28376643 ttttttagcggcaccaaaattattatttttacttagtagttagtactatatagatatatttctttttaattcgttttgattaaatttgtcg-aaatatat 28376741  T
Q  283 ttttagataactttgattataaacgaatgtttt 315  Q
    ||||||||||||| |||| |||| |||| ||||    
T  28376742 ttttagataacttcgattgtaaatgaatatttt 28376774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 133 - 310
Target Start/End: Complemental strand, 22486787 - 22486611
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| ||||||| ||  |||||||||| |||| | |||| || |||||||| || ||||||||||||||| ||| |||||||| | ||| | |    
T  22486787 caggggtggccctgagggcaggtgcgaggggcggcagcccagggcatcatttttttag-ggtaccaaaattattattcttacttagtagtcactacaaaa 22486689  T
Q  233 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||| ||||||||||||| | |||| |||||||||||||||||||  ||||||| ||||||||||||||| ||||    
T  22486688 tagatatgtttctttttaatttgttttgattaattctattgaaaatatcattttagagaactttgattataaatgaat 22486611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 13236214 - 13236305
Alignment:
Q  229 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  13236214 tatatatatatatttctttttaattcgctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaac 13236305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 320
Target Start/End: Original strand, 9191180 - 9191317
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 276  Q
    ||||| ||||||||  ||| ||||||||||||||||| ||||||||||      ||||||||||||| |||||||||| ||||| ||||||||||| |||    
T  9191180 caccatttttttaggagcatcaaaattattatttttacttagtagtta------tatagatatatttatttttaattcactttgattaattctattcaaa 9191273  T
Q  277 atatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||||||||| |||| |||||||||| |||| |||| ||||    
T  9191274 atatatttttagagaactatgattataaatgaatcttttacaac 9191317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 35481111 - 35481023
Alignment:
Q  218 gtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaat-atatttttagataactttgattataaa 305  Q
    ||||||||||||||||||||| ||||||| ||||  ||||||   |||||||||||||||| ||||||||||| ||| |||||||||||    
T  35481111 gtagttagtactatatagataaatttcttattaacccgctttcaataattctattgaaaatgatatttttagagaacattgattataaa 35481023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 43872544 - 43872620
Alignment:
Q  234 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||||||||| |||||| |||||  |||||||||||| ||||||||||||| | ||||||||||||||| ||||    
T  43872544 agatatatttcttcttaatttgctttcattaattctattgtaaatatatttttaaagaactttgattataaatgaat 43872620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 31277900 - 31278007
Alignment:
Q  204 attatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat-ttttagataactttgattat 302  Q
    |||||||||||||||||||||||||   ||  ||||||||  |||||| || ||||| ||||||||||||||||||| | ||||||| ||| ||||||||    
T  31277900 attatttttatttagtagttagtac---atgcatatattt--ttttaactcactttgattaattctattgaaaatatttattttagagaaccttgattat 31277994  T
Q  303 aaacgaatgtttt 315  Q
    ||| |||| ||||    
T  31277995 aaatgaatctttt 31278007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 13236111 - 13236201
Alignment:
Q  145 tgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattatta-tttttatttagtagttagtactatata 234  Q
    |||||| ||||| ||||||||  | |||| ||||||| | ||| || |||||||||||||||| |||||| ||||||||||||||||||||    
T  13236111 tgagggtgggcaggaggggcgacaacctagggcaccattgtttaaggggcaccaaaattattattttttacttagtagttagtactatata 13236201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 21347574 - 21347520
Alignment:
Q  256 ctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||| |||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  21347574 ctttgattaattctattgaaaatatatttttaaataaatttgattataaatgaat 21347520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 18987267 - 18987198
Alignment:
Q  230 atatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgat 299  Q
    |||||||||||||||||| |||||   |||| |||||| |||||||| |||||||||||| |||||||||    
T  18987267 atatagatatatttctttgtaattatgtttgattaattatattgaaattatatttttagagaactttgat 18987198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 31383469 - 31383597
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 291  Q
    |||| ||||||||||||||||  ||| |||||| || ||||||  |||| || |||||||||  ||||  |||||| ||||||||||||  |||||| ||    
T  31383469 ggcatcaaaattattattttttcttaatagttaatattatataagtataattatttttaatttcctttaattaattttattgaaaatatggttttagcta 31383568  T
Q  292 actttgattataaacgaatgtttttcaac 320  Q
    ||||||| ||| || |||| |||| ||||    
T  31383569 actttgaatatgaatgaatcttttgcaac 31383597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 32646726 - 32646618
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 276  Q
    ||||| ||||||| || ||| |||||||||||||||||| |||||| |||| ||| ||||| ||||  |||||||||   |||  |||||| |||| |||    
T  32646726 caccatttttttaaagacactaaaattattatttttattcagtagtgagtattatgtagatgtatt--tttttaattacttttaattaattttattaaaa 32646629  T
Q  277 atatattttta 287  Q
    |||||||||||    
T  32646628 atatattttta 32646618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 12181824 - 12181942
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    |||||||||||||||| |||||| |||||| |||||||| ||||   || |||| | ||||||  ||||| |||||| || ||||||||||| || ||||    
T  12181824 aaaattattatttttacttagtaattagtattatatagaaatat---ttattaaattgctttgactaattatattgacaa-atatttttagagaattttg 12181919  T
Q  298 attataaacgaatgtttttcaac 320  Q
    ||||| || |||| |||| ||||    
T  12181920 attatgaatgaatattttgcaac 12181942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 320
Target Start/End: Original strand, 12426252 - 12426370
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    |||||||||||||||| |||||| |||||| |||||||| ||||   || |||| | ||||||  ||||| |||||| || ||||||||||| || ||||    
T  12426252 aaaattattatttttacttagtaattagtattatatagaaatat---ttattaaattgctttgactaattatattgacaa-atatttttagagaattttg 12426347  T
Q  298 attataaacgaatgtttttcaac 320  Q
    ||||| || |||| |||| ||||    
T  12426348 attatgaatgaatattttgcaac 12426370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 394
Target Start/End: Complemental strand, 13580320 - 13580289
Alignment:
Q  363 aatttattgtttcgtccaggacaccaaaaatc 394  Q
    ||||||||||||||||||||||||||||||||    
T  13580320 aatttattgtttcgtccaggacaccaaaaatc 13580289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 41849429 - 41849504
Alignment:
Q  245 tttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||| | || ||| |||||||||||||||||||||||||| | ||  |||||||| || |||| |||||||||    
T  41849429 tttttaacttgcattgattaattctattgaaaatatatttttaaagaatcttgattattaatgaatctttttcaac 41849504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 4311613 - 4311516
Alignment:
Q  173 aaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatata-tttctttttaattcgctttggttaattct 269  Q
    ||||||||| ||||| || |||| |||||||||||||| |||||  ||||||||| | |||| || || ||| ||||||| ||| |||| ||||||||    
T  4311613 aaggcaccaatttttgaggggcatcaaaattattatttatatttgatagttagtagtgtatacatgtattttttttttaactcgttttgattaattct 4311516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 34142212 - 34142257
Alignment:
Q  357 gggtacaatttattgtttcgtccaggacaccaaaaatcctaggacc 402  Q
    |||||||||||||||||||||||||  || |||||||| |||||||    
T  34142212 gggtacaatttattgtttcgtccagagcatcaaaaatcttaggacc 34142257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 7255401 - 7255519
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttcttttt--aattcgctttggttaattctattgaaaatatatttttagataactt 295  Q
    ||||||| |||||||| ||||| ||||||| |||||| |||| ||| |||||  || | ||||| ||| ||  |||||||||||| |||||||| |||      
T  7255401 aaaattaatatttttacttagtggttagtattatataaatatgtttttttttttaaattgctttagttgatattattgaaaatatgtttttagagaac-a 7255499  T
Q  296 tgattataaacgaatgtttt 315  Q
    |||||||||| |||| ||||    
T  7255500 tgattataaatgaatatttt 7255519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 24606773 - 24606805
Alignment:
Q  185 ttttagaggcaccaaaattattatttttattta 217  Q
    |||||||||||| ||||||||||||||||||||    
T  24606773 ttttagaggcacaaaaattattatttttattta 24606805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 308
Target Start/End: Original strand, 26801891 - 26801962
Alignment:
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacga 308  Q
    ||||||||  |||||| || ||||| |||||| |||||||| |||||| ||||| ||| ||||||||||||||    
T  26801891 atatattttgttttaactcactttgattaattatattgaaa-tatattattagagaacattgattataaacga 26801962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 32349322 - 32349358
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagt 219  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  32349322 ttttttacaggcaccaaaattattattttcatttagt 32349358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 32365983 - 32366019
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagt 219  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  32365983 ttttttacaggcaccaaaattattattttcatttagt 32366019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 23869983 - 23870170
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| ||||||||||| |||||||||  |||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  23869983 caggggtggccctgagggcgggctcgaggggcgacagcccagggcaccacttttttaggggcaccaaaattattatttttacttagtagttagtactata 23870082  T
Q  233 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  23870083 tagatatatatttttttaattcgttttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 23870170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 36071705 - 36071573
Alignment:
Q  178 accacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaa 277  Q
    |||| |||| ||| ||||| |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  36071705 accatttttctaggggcactaaaattattatttttacttgatagttagtactatatagatatatttctttttaattttctttgattaattcaattgaaaa 36071606  T
Q  278 tatatttttagataactttgattataaacgaat 310  Q
    |||||||||||| ||||||||||||||| ||||    
T  36071605 tatatttttagagaactttgattataaatgaat 36071573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 133 - 315
Target Start/End: Original strand, 29118407 - 29118590
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| ||||||||||| ||||||| || |||  | ||||||| |||| | | ||||||||||||||||||||||| ||||||||||||||| |    
T  29118407 caggggtggccctgagggcgggctcgaggggtgggagctcagggcaccatttttattggggcaccaaaattattatttttatgtagtagttagtactaca 29118506  T
Q  233 tagatatatttctttttaattcgc-tttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||||||||||||||||||| | || |||  |||||| |||||||||||| |||||| | |||||||||||| || |||| ||||    
T  29118507 tagatatatttctttttaaattgcttttaattaattatattgaaaatatgtttttaaagaactttgattatgaatgaatatttt 29118590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 7853231 - 7853408
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| | |||| ||||  ||| ||||| | |||| |||| || | | ||| |||||||||| |||||||||||| ||||||||||||||||||    
T  7853231 caggggtggccctaagggtgggcgggagaggcggcaacctagggcatcattatcttacaggcaccaaatttattatttttacttagtagttagtactata 7853330  T
Q  233 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||||| || |||||||||  |||| |||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  7853331 tagatatatatccttttaattcagtttgattaatgatattgaaaatatatttttagaaaactttgattataaatgaat 7853408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 135 - 310
Target Start/End: Complemental strand, 3643334 - 3643161
Alignment:
Q  135 ggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 234  Q
    ||||||||| |||||| ||||| |||||||||||||| | ||||||| ||||| || | || ||||||||||||||| | ||||||||||||||||||||    
T  3643334 ggggtggccctgagggtgggcaggaggggcggtagcccatggcaccattttttaag-gacatcaaaattattatttt-acttagtagttagtactatata 3643237  T
Q  235 gatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||||||||||||||| || ||| |||||| |||||||||  |||||||| | | ||||||| ||||| ||||    
T  3643236 gatatatttctttttaatttgcattgattaattatattgaaaagttatttttaaagagctttgataataaatgaat 3643161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 157 - 302
Target Start/End: Original strand, 2113799 - 2113944
Alignment:
Q  157 cgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgc 256  Q
    ||||||| || |||| | ||||||| |||  ||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||| | ||    
T  2113799 cgaggggtgggagcccagggcaccattttcataggggcaccaaaattattatctttatgtagtagttagtactacatagatatatttctttctaaattgc 2113898  T
Q  257 tttggttaattctattgaaaatatatttttagataactttgattat 302  Q
    |||| |||||| |||||||||||| |||||| | ||| ||||||||    
T  2113899 tttgattaattatattgaaaatatgtttttaaagaaccttgattat 2113944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 15987018 - 15986909
Alignment:
Q  178 accacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaa 277  Q
    |||| ||||||||| ||| ||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||  | |||| ||||||||||||||||    
T  15987018 accatttttttagaagcatcaaaattgttatctttaattagtagttagtactatatagatatatttatttttaatgtgttttgattaattctattgaaaa 15986919  T
Q  278 tatattttta 287  Q
    |||| |||||    
T  15986918 tataatttta 15986909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 162 - 320
Target Start/End: Original strand, 12320368 - 12320527
Alignment:
Q  162 ggcggtagcctaaggcaccacttttttagaggcaccaaaattatta-tttttatttagtagttagtactatatagatatatttctttttaattcgctttg 260  Q
    |||||||||| | | ||||| | |||||| ||||  |||||||||| |||||| |||||||||||||  |||||||||||| ||||||||||||| ||||    
T  12320368 ggcggtagcccatgacaccattattttaggggcatgaaaattattactttttacttagtagttagtataatatagatatatatctttttaattcggtttg 12320467  T
Q  261 gttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
     |||||| |||||| ||||| |||||| | ||||| ||||||||| |||| |||| ||||    
T  12320468 attaattatattgagaatatttttttaaaaaacttcgattataaatgaatattttgcaac 12320527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 4596601 - 4596503
Alignment:
Q  184 tttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    |||||| ||| | ||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||| ||||| || ||| ||||||||||||||    
T  4596601 tttttataggtatcaaaattattatttttatttagttgttagtaatatatatatatatttgtttttaattcactttgattgattttattgaaaatatat 4596503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 5627482 - 5627614
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    |||||||| ||||||||||||||||||||||  | |||||||||| |||||| ||     ||||||||||||| |||| |||||| ||||||||| || |    
T  5627482 ttttttaggggcaccaaaattattatttttacatggtagttagtaatatatatat-----tctttttaattcgttttgattaattatattgaaaaaatgt 5627576  T
Q  283 ttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||| |||||| |||||||||| |||| |||| ||||    
T  5627577 ttttatataactctgattataaatgaatattttgcaac 5627614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 203 - 320
Target Start/End: Complemental strand, 43515980 - 43515863
Alignment:
Q  203 tattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 302  Q
    |||| |||||| ||| ||||||||| ||||||||||||| ||||||||||| | |||| |||||| |||| | |||||||| ||||| ||||||||||||    
T  43515980 tattttttttacttattagttagtattatatagatatatatctttttaatttggtttgattaattatattaagaatatattgttagaaaactttgattat 43515881  T
Q  303 aaacgaatgtttttcaac 320  Q
    ||| |||| |||| ||||    
T  43515880 aaatgaatcttttgcaac 43515863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 310
Target Start/End: Original strand, 7102144 - 7102255
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    |||||||||||||||| |  | |||||||| ||||||||||||||| ||||||||| | |||| ||||| |||||||||||| ||||||||| ||||||     
T  7102144 aaaattattatttttagtcggcagttagtattatatagatatattt-tttttaatttgttttgattaatcctattgaaaatacatttttagagaactttt 7102242  T
Q  298 attataaacgaat 310  Q
    |||||||| ||||    
T  7102243 attataaatgaat 7102255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 55147979 - 55147880
Alignment:
Q  173 aaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctatt 272  Q
    ||||||||  || ||||| |||||||||||||||||||||| ||| |||| | ||| | |||||||||||||||||||||| | |||| |||||||||||    
T  55147979 aaggcaccttttctttaggggcaccaaaattattatttttacttaatagtcactacaacatagatatatttctttttaatttgttttgattaattctatt 55147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 199 - 310
Target Start/End: Complemental strand, 35372230 - 35372126
Alignment:
Q  199 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 298  Q
    ||||||||||||||| ||||||||||| ||||||||       || ||||||||||  |||| |||||| ||||||||||||||||||||| | |||| |    
T  35372230 aaattattatttttacttagtagttaggactatata-------ttttttttaattcagtttgattaattatattgaaaatatatttttagagagctttaa 35372138  T
Q  299 ttataaacgaat 310  Q
    ||||||||||||    
T  35372137 ttataaacgaat 35372126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 40807977 - 40807924
Alignment:
Q  219 tagttagtactatatagatatatttctttttaattcgctttggttaattctatt 272  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  40807977 tagttagtattatatagatatatttctttttaattcgctttgattaattctatt 40807924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 304
Target Start/End: Complemental strand, 41442578 - 41442475
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    ||||||||||||||||||||||    ||||| ||||||||||| || |||||||||  ||||| |||||| || ||||||||| |||||||| || ||||    
T  41442578 aaaattattatttttatttagtc---agtacaatatagatatacttatttttaatttactttgattaattatactgaaaatatctttttagagaagtttg 41442482  T
Q  298 attataa 304  Q
    |||||||    
T  41442481 attataa 41442475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 55236220 - 55236309
Alignment:
Q  137 ggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagagg-caccaaaattattatttttatttagtagttag 225  Q
    ||||||||||||||||||| |||||||| | |||| | | ||||| ||||||  ||| || |||||||||||||||||||||||||||||    
T  55236220 ggtggccttgagggcgggcgcgaggggcagcagcccaggacaccattttttttaagggcatcaaaattattatttttatttagtagttag 55236309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 25779774 - 25779666
Alignment:
Q  194 caccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataac 293  Q
    |||||||||||||||||||| ||| |||||||||| ||  | |||||||||||||||  |   |||| |||||| | || ||||||||||| |||| |||    
T  25779774 caccaaaattattatttttacttattagttagtacgatgcacatatatttctttttacctttttttgattaattttgttaaaaatatatttgtagaaaac 25779675  T
Q  294 tttgattat 302  Q
    |||||||||    
T  25779674 tttgattat 25779666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 47059676 - 47059744
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 251  Q
    ||||| || |||||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||||    
T  47059676 tttttaaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 47059744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 47082126 - 47082058
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 251  Q
    ||||| || |||||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||||    
T  47082126 tttttaaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 47082058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 29369992 - 29369934
Alignment:
Q  231 tatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 289  Q
    |||||||| |||| ||||||||| | |||| ||||||||||||||||||||||||||||    
T  29369992 tatagataaatttatttttaatttgttttgattaattctattgaaaatatatttttaga 29369934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 53178749 - 53178852
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    |||||||||| | |||||||||||||||||| |||||| |||||||  ||||||| |  ||||| |||||| |||||||  ||||||||||   ||||||    
T  53178749 caaaattattttatttatttagtagttagtattatataaatatatt--tttttaacttactttgattaattttattgaatgtatatttttaacgaacttt 53178846  T
Q  297 gattat 302  Q
    ||||||    
T  53178847 gattat 53178852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 38087654 - 38087703
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatat 241  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||||||    
T  38087654 ggcaccaaaattattatttttacttaatagttagtacaatatagatatat 38087703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 6137184 - 6137248
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 241  Q
    ||||| ||||||||  |||  |||||||||||||||||||||||||||||| |||||| ||||||    
T  6137184 caccatttttttaggagcattaaaattattatttttatttagtagttagtaatatatatatatat 6137248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 25790449 - 25790493
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagta 227  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  25790449 ttttttaggggcaccaaaattattatttttatttaatagttagta 25790493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 46443919 - 46443812
Alignment:
Q  195 accaaaattattatttttatttagtagttagtactatatagatat-atttctttttaattcgctttggttaattctattgaaaatatatttttagataac 293  Q
    ||||||||||||||||| |||||||||||||| | ||||| || | || |  |||||| ||| |||| |||||| ||||  ||||||||||||||||||     
T  46443919 accaaaattattatttt-atttagtagttagttcaatatacatgtcatataattttaactcgttttgattaattttattataaatatatttttagataat 46443821  T
Q  294 tttgattat 302  Q
    |||||||||    
T  46443820 tttgattat 46443812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 55147739 - 55147686
Alignment:
Q  257 tttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    |||| |||||| |||||||||| | |||||||| ||||||||||||||| ||||    
T  55147739 tttgattaattttattgaaaatgtctttttagagaactttgattataaatgaat 55147686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 28477242 - 28477202
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttattta 217  Q
    ||||| ||||||||||||| |||||| ||||||||||||||    
T  28477242 caccatttttttagaggcatcaaaataattatttttattta 28477202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 40807910 - 40807870
Alignment:
Q  262 ttaattctattgaaaatatatttttagataactttgattat 302  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  40807910 ttaattctattaaaaatatgtttttagataacattgattat 40807870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 134 - 315
Target Start/End: Original strand, 12174257 - 12174438
Alignment:
Q  134 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 233  Q
    |||||||||| ||||||| |||| ||||||| ||| |||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  12174257 aggggtggccctgagggcaggcaggaggggcagtaacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagtactatat 12174356  T
Q  234 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    |||||||||||||||||||||| |||| |||||| |||| |||||||||||||||| |||||| ||| |||| |||| ||||    
T  12174357 agatatatttctttttaattcgttttgattaattatattaaaaatatatttttagagaactttaattgtaaatgaatctttt 12174438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 9815804 - 9815693
Alignment:
Q  194 caccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataac 293  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |||    
T  9815804 caccaaaattattatttttacttagtagttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaatatatttttagaaaac 9815705  T
Q  294 tttgattataaa 305  Q
    | ||||||||||    
T  9815704 tatgattataaa 9815693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 290
Target Start/End: Original strand, 13229255 - 13229401
Alignment:
Q  145 tgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttc 244  Q
    |||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  |||| ||||||| | |||||    
T  13229255 tgagggcgggcaggaggggcggcagcccaaggcaccatttttttagaggcaccaaaattattatttttacttagtagtcggtacaatatagaaaaatttc 13229354  T
Q  245 tttttaattcg-ctttggttaattctattgaaaatatatttttagat 290  Q
    ||||||||| | | ||| ||||||||||||||||||| |||||||||    
T  13229355 tttttaatttgtccttgattaattctattgaaaatatctttttagat 13229401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 133 - 320
Target Start/End: Complemental strand, 35122144 - 35121953
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttag---tac- 228  Q
    ||||||| ||| |||||||||||  ||||||||| |||  ||||||||| ||  |||| |||||||||||||||||||||| ||||||||||    ||      
T  35122144 caggggtagccctgagggcgggcttgaggggcggcagcacaaggcaccatttaattaggggcaccaaaattattatttttacttagtagttatatatata 35122045  T
Q  229 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||| |||||| | | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  35122044 tatatatatatatatatatttaattcgctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 35121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 157 - 320
Target Start/End: Original strand, 31787777 - 31787938
Alignment:
Q  157 cgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgc 256  Q
    ||||||||||||||| | |||||| ||||||| || |   |||||||||||||| || ||| ||||||||| ||  ||||||||||| ||||||||||||    
T  31787777 cgaggggcggtagcccagggcaccgcttttttggatgt--caaaattattatttgtacttaatagttagtattaagtagatatatttatttttaattcgc 31787874  T
Q  257 tttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| |||| ||||    
T  31787875 tttgattaattctattgaaaatatatttgtagataactttaattataaatgaatattttgcaac 31787938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 195 - 315
Target Start/End: Complemental strand, 34573319 - 34573197
Alignment:
Q  195 accaaaattattatttttatttagtagttagtactatatagatatat--ttctttttaattcgctttggttaattctattgaaaatatatttttagataa 292  Q
    |||||||||||||||||||||||||||||| || |||||||||||||  |||||||||||||| |||| |||||| ||||||||||||||||||| | ||    
T  34573319 accaaaattattatttttatttagtagttaatattatatagatatatatttctttttaattcggtttgattaattttattgaaaatatatttttaaagaa 34573220  T
Q  293 ctttgattataaacgaatgtttt 315  Q
    ||||||||||||| |||| ||||    
T  34573219 ctttgattataaatgaatctttt 34573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 10669066 - 10668897
Alignment:
Q  138 gtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagat 237  Q
    |||| |||||||| ||||  ||||||| | || | | ||||||| |||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||    
T  10669066 gtggtcttgagggtgggcgggaggggcagcagtccagggcaccatttttttaggggcaccaaaattattatttttacttattagttagtattatatagat 10668967  T
Q  238 atatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    |||| |||||| |||||  |||| |||||| |||||||||||| |||||||| ||| ||||||||||| ||||    
T  10668966 atatatcttttgaattc-atttgattaattatattgaaaatat-tttttaga-aacgttgattataaatgaat 10668897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 34540988 - 34540884
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||| |||| ||| |||| ||| |||||||||||||||||||||| ||||  |||    
T  34540988 aaaattattatttttacttagtaattaatactatatagatatatttcttattaactcgttttgattagttctattgaaaatatatttttaaataatcttg 34540889  T
Q  298 attat 302  Q
    |||||    
T  34540888 attat 34540884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 33344873 - 33344944
Alignment:
Q  249 taattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  33344873 taattcgctttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaac 33344944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 279
Target Start/End: Original strand, 34969382 - 34969478
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaata 279  Q
    |||||||  |||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||  | || |||  |||||||||||||    
T  34969382 ttttttaagggcatcaaaattattatttttacttagtagttggtactatatagatatatttatttttaattctttatgattagatctattgaaaata 34969478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 33607204 - 33607102
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    |||||||| | |||||||||||||||||||||||| |||||| || |||||| |||  ||| |||| || ||  |||| ||||||||||||||||||| |    
T  33607204 ttttttagggacaccaaaattattatttttatttaatagttaatagtatatacataattttattttcaactcattttgattaattctattgaaaatattt 33607105  T
Q  283 ttt 285  Q
    |||    
T  33607104 ttt 33607102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 4338056 - 4337976
Alignment:
Q  161 gggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 241  Q
    |||||| || ||| ||||||| | |||||  |||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  4338056 gggcggaagtctagggcaccattattttatgggcaccaaaattattacttttacttagtagttagtactatatatatatat 4337976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 31153764 - 31153664
Alignment:
Q  199 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 298  Q
    |||||||||| || || | ||||| ||||||||||||||||||||  |||||| ||  |||  |||||| |||||||||||| |||||| ||||||||||    
T  31153764 aaattattatattaatgttgtagtcagtactatatagatatatttaattttaaatccttttaattaattatattgaaaatatgtttttaaataactttga 31153665  T
Q  299 t 299  Q
    |    
T  31153664 t 31153664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 34329899 - 34329844
Alignment:
Q  250 aattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  34329899 aattcactttgattaattctattgaaaatatatttttagagaactttgcttataaa 34329844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 3359547 - 3359625
Alignment:
Q  196 ccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 274  Q
    |||||||||||||||||||| |||| ||  || |||||| ||||||||||||||||| || |||| ||| |||||||||    
T  3359547 ccaaaattattatttttattcagtacttcataatatatacatatatttctttttaatccgttttgattatttctattga 3359625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 33344760 - 33344823
Alignment:
Q  161 gggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagtta 224  Q
    |||||| |||| ||||||||| ||  |||| |||||||||||||||||||||| ||||||||||    
T  33344760 gggcggcagcccaaggcaccatttaattaggggcaccaaaattattatttttacttagtagtta 33344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 33871145 - 33871052
Alignment:
Q  189 agaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattttt 286  Q
    ||||||||||||||||||||||||| |   ||||||||| || ||| ||||||||||| |||| |||||||| |||  ||||| |||||||| |||||    
T  33871145 agaggcaccaaaattattatttttact---tagttagta-tacatacatatatttcttcttaactcgctttgattatctctatcgaaaatattttttt 33871052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 6274063 - 6274005
Alignment:
Q  194 caccaaaattattatttttatttagtagttagtactatatagatata-tttctttttaa 251  Q
    |||||||||||||||||| | ||||||||||||| |||||| ||||| |||||||||||    
T  6274063 caccaaaattattattttaacttagtagttagtattatatacatatattttctttttaa 6274005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 392
Target Start/End: Original strand, 31787975 - 31788009
Alignment:
Q  358 ggtacaatttattgtttcgtccaggacaccaaaaa 392  Q
    |||||||||||||||||||||||||||||||||||    
T  31787975 ggtacaatttattgtttcgtccaggacaccaaaaa 31788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 320
Target Start/End: Original strand, 11274532 - 11274675
Alignment:
Q  172 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 271  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| || ||| |||||  |||||||| ||||   ||||||| | |||||| |||||| |||    
T  11274532 taagacaccattttcttaaagacatcaaaattattatttttactt-gtaattagtgttatatagaaatat---tttttaaattgctttgattaattatat 11274627  T
Q  272 tgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||| || ||||||||||| || ||||||||| || |||| |||| ||||    
T  11274628 tgacaa-atatttttagagaattttgattatgaatgaatattttgcaac 11274675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 31237045 - 31236971
Alignment:
Q  178 accacttttttagaggcaccaaaattattatttttatttagtagttagt----actatatagatatatttctttt 248  Q
    |||| |||| ||||||||||||||||||| ||| ||  |||||||||||    ||||||||| ||||||||||||    
T  31237045 accatttttatagaggcaccaaaattattgtttatacgtagtagttagtattaactatataggtatatttctttt 31236971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 31246421 - 31246347
Alignment:
Q  178 accacttttttagaggcaccaaaattattatttttatttagtagttagt----actatatagatatatttctttt 248  Q
    |||| |||| ||||||||||||||||||| ||| ||  |||||||||||    ||||||||| ||||||||||||    
T  31246421 accagttttatagaggcaccaaaattattgtttctacgtagtagttagtactaactatataggtatatttctttt 31246347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 7544970 - 7545014
Alignment:
Q  245 tttttaattcgctttggttaattctattgaaaatatatttttaga 289  Q
    ||||||| ||| |||| |||||||| |||||||||||||||||||    
T  7544970 tttttaactcgttttgtttaattcttttgaaaatatatttttaga 7545014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 33344988 - 33345024
Alignment:
Q  363 aatttattgtttcgtccaggacaccaaaaatcctagg 399  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  33344988 aatttattgtttcgtccagggcaccaaaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 35121910 - 35121874
Alignment:
Q  363 aatttattgtttcgtccaggacaccaaaaatcctagg 399  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  35121910 aatttattgtttcgtccagggcaccaaaaatcttagg 35121874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 175 - 320
Target Start/End: Original strand, 35812592 - 35812738
Alignment:
Q  175 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 274  Q
    ||||||| |||||||| |||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  35812592 ggcaccatttttttaggggcatcaaaattattatttttacttaataattagtactatatagatatatttctttttaattcgctttgatcaattctattga 35812691  T
Q  275 -aaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
     ||||||||||||||||||||||||||||||| |||| |||| ||||    
T  35812692 taaatatatttttagataactttgattataaatgaatattttgcaac 35812738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 132 - 305
Target Start/End: Complemental strand, 21129521 - 21129348
Alignment:
Q  132 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 231  Q
    |||||||||||| |||||| |||| |||||||| | ||   ||||||||| |||||||| || || ||| |||||||| |||||||||||| | ||| |     
T  21129521 tcaggggtggccgtgagggtgggcgcgaggggcagaagttcaaggcaccatttttttaggggtactaaatttattattcttatttagtagtcactacaaa 21129422  T
Q  232 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| || ||||||||||||    
T  21129421 atagatatatttctttttaatttggtttgattaattctattgaaaatatttttttagagaattttgattataaa 21129348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 215 - 310
Target Start/End: Original strand, 26912345 - 26912440
Alignment:
Q  215 ttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| ||||    
T  26912345 ttagtagttagtactatatagatatatttctttttaattcgctttgattaattctattcaagatatatttttagataactttgattacaaatgaat 26912440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 136 - 305
Target Start/End: Complemental strand, 9429526 - 9429358
Alignment:
Q  136 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatag 235  Q
    |||||||| |||||| |||||  |||| || || || ||| || || |||||||| ||||||||||||| |||||||||||| ||||||||| ||||||     
T  9429526 gggtggccctgagggtgggcagaagggacgataacccaagacatcatttttttaggggcaccaaaattagtatttttatttaatagttagtattatataa 9429427  T
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    |||||||||||||||  ||| |||| ||||||||||||||||||| | |||| | ||||| |||||||||    
T  9429426 atatatttctttttatctcgttttgattaattctattgaaaatat-tatttaaagaacttcgattataaa 9429358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 26914497 - 26914349
Alignment:
Q  171 ctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattcta 270  Q
    |||||| |||| |||||||| || | ||||||||||||||||| ||||||||||||| |||||| |||| |||  |||||||||| |||| |||||| ||    
T  26914497 ctaaggtaccatttttttag-ggtatcaaaattattatttttacttagtagttagtattatatacatatgtttacttttaattcgttttgattaattata 26914399  T
Q  271 ttgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||||||||||||| ||||| || |||||||| |||| |||| ||||    
T  26914398 ttgaaaatatatttttaaataacgttaattataaatgaatattttgcaac 26914349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 3351119 - 3351203
Alignment:
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||    
T  3351119 atatatttctttttaattcgctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaac 3351203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 199 - 305
Target Start/End: Complemental strand, 3940778 - 3940672
Alignment:
Q  199 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 298  Q
    ||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||  ||||| ||||||||||| ||||||| |||||| | ||||||||    
T  3940778 aaattattatttttacttagtagtaagtataatatagatatatttctttttaatttactttgattaattctatttaaaatatctttttaaagaactttga 3940679  T
Q  299 ttataaa 305  Q
    |||||||    
T  3940678 ttataaa 3940672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 21828097 - 21828273
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| |||||| |||| |||||||| | |||| | ||||||| || ||||| ||||  |||||||||||||||| ||  |||| | ||| | |    
T  21828097 caggggtggccctgagggagggcgcgaggggctgcagcccagggcaccatttctttaggggcataaaaattattatttttacttcatagtcactacaaaa 21828196  T
Q  233 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||||||||||||||| | | |||| ||||| ||||||||||||  |||||||| ||||||||||||||| ||||    
T  21828197 tagatatatttctttttaacttgttttgattaatgctattgaaaata-ctttttagagaactttgattataaatgaat 21828273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 320
Target Start/End: Complemental strand, 42336062 - 42335951
Alignment:
Q  209 ttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacga 308  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||| |||  |||||| || |||||||||||||||| | ||||||||||||||| ||    
T  42336062 ttttagttaatagttagtattatatagatatatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaaaactttgattataaatga 42335963  T
Q  309 atgtttttcaac 320  Q
    || |||| ||||    
T  42335962 atcttttgcaac 42335951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 40351902 - 40351788
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttcttttt-aattcgctttggttaattctattgaaaatatatttttagat 290  Q
    ||||||||| |||||||||||| | ||||||||||| |||||||||||| || ||||| ||||  | ||| |||||||||||||||||||||||||| |     
T  40351902 ggcaccaaagttattatttttactcagtagttagtattatatagatataattattttttaattatccttgtttaattctattgaaaatatatttttaaag 40351803  T
Q  291 aactttgattataaa 305  Q
    |||||||||||||||    
T  40351802 aactttgattataaa 40351788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 13431825 - 13431688
Alignment:
Q  165 ggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggtta 264  Q
    |||| |||| ||||||| ||||||||  |||| |||||||||||| ||||||||||| ||||| ||||||||||||||| ||||| |||   ||||  ||    
T  13431825 ggtaacctagggcaccatttttttaggagcactaaaattattattcttatttagtaggtagtattatatagatatatttatttttgattttttttgaata 13431726  T
Q  265 attctattgaaaatatatttttagataactttgattat 302  Q
    |||||||||||||||||||| | || ||| ||||||||    
T  13431725 attctattgaaaatatatttgtggagaaccttgattat 13431688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 33480633 - 33480529
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    |||| ||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||| | |||||| |||||| |||| ||||||| |    
T  33480633 ttttataggggcaccaaaattattatttttatgtaatagttagtactacatagatatatttctttctaaattgctttgattaattatattaaaaatatgt 33480534  T
Q  283 tttta 287  Q
    |||||    
T  33480533 tttta 33480529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 296
Target Start/End: Original strand, 12177813 - 12177907
Alignment:
Q  204 attatttttatttagtagttagtactatatagatatattt--ctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    |||||||||| ||||||||||||||||||||||||||| |  |||||||||||| |||  |||||| ||||||||||||||||||||| ||||||    
T  12177813 attatttttacttagtagttagtactatatagatatatatatctttttaattcggtttaattaattttattgaaaatatatttttagaaaacttt 12177907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 22318791 - 22318685
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    ||||||||||||||||||||||||||| || ||||||||||| | || |||||||||  |||| |||||| |||||| |||||||||||||| ||||||     
T  22318791 aaaattattatttttatttagtagttaatattatatagatatgtatc-ttttaattccgtttgattaattatattgagaatatatttttagaaaacttta 22318693  T
Q  298 attataaa 305  Q
    ||||||||    
T  22318692 attataaa 22318685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 15134645 - 15134537
Alignment:
Q  132 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 231  Q
    |||||||||||| |||||||||||   |||||||| |||| | |||| ||  ||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  15134645 tcaggggtggccctgagggcgggcttaaggggcggcagcccagggcatcaaatttttaggggcaccaaaattattatttttacttagtagctagtactat 15134546  T
Q  232 atagatata 240  Q
    ||| |||||    
T  15134545 atatatata 15134537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 26448382 - 26448495
Alignment:
Q  211 ttatttagtagttagtactatatagatat----atttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaac 306  Q
    |||| ||||||||||||||||||||||||    ||||||||||||||| ||||| ||||||||| | ||| |||||||||||| ||||||||| |||||     
T  26448382 ttatctagtagttagtactatatagatatatatatttctttttaattcactttgattaattctactaaaagtatatttttagagaactttgataataaat 26448481  T
Q  307 gaatgtttttcaac 320  Q
    |||| |||| ||||    
T  26448482 gaatcttttgcaac 26448495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 30095817 - 30095750
Alignment:
Q  248 ttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  30095817 ttaattcgcttttattaattctattgaaaaaatatttttagataactttgattataaatgaatatttt 30095750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 30095927 - 30095845
Alignment:
Q  159 aggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 241  Q
    |||||||| |||| | ||||||| |||||||| |||||||||||||||||||||| |||||||||| || |||||| ||||||    
T  30095927 aggggcggcagcccagggcaccatttttttaggggcaccaaaattattatttttacttagtagttattaatatatatatatat 30095845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 15133402 - 15133313
Alignment:
Q  231 tatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||| |||||| | ||| ||||||| |||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  15133402 tatatatatatatatttctaattcgttttgattaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaac 15133313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 21292872 - 21292805
Alignment:
Q  184 tttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 251  Q
    ||||||| |||||||||||||||||||||| |||||||||| ||  ||||| ||||||||||||||||    
T  21292872 tttttaggggcaccaaaattattatttttacttagtagttaatatcatataaatatatttctttttaa 21292805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 21136094 - 21136167
Alignment:
Q  165 ggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatat 239  Q
    ||||||| ||||||||| ||||| || ||||||||||| |||||| ||| ||||||||||||||| |||| ||||    
T  21136094 ggtagcccaaggcaccattttttaag-ggcaccaaaatgattattcttagttagtagttagtactgtatatatat 21136167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 37996495 - 37996545
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatat 233  Q
    |||||||  |||||||||||||||||||||| |||||||||| ||||||||    
T  37996495 ttttttatgggcaccaaaattattatttttacttagtagttaatactatat 37996545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 292
Target Start/End: Original strand, 32982336 - 32982432
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattg--aaaatatatttttagataa 292  Q
    |||||||||||||||| || |||||||| |   |||| |||||||| ||||||| ||  |||| ||||||||||||  |||| ||||||||||||||    
T  32982336 aaaattattatttttacttggtagttaggagagtatacatatatttttttttaactcattttgattaattctattgaaaaaaaatatttttagataa 32982432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 31329716 - 31329665
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttt 248  Q
    ||||||||||||||||| || ||| |||||| |||||| |||||||||||||    
T  31329716 caaaattattatttttacttcgtaattagtattatatacatatatttctttt 31329665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 48008661 - 48008596
Alignment:
Q  244 ctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||||||  ||||| ||||||||||| |||| ||| ||||||| ||||||||||||||| ||||    
T  48008661 ctttttaatttactttgattaattctattaaaaaaata-ttttagagaactttgattataaaggaat 48008596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Complemental strand, 30095715 - 30095679
Alignment:
Q  363 aatttattgtttcgtccaggacaccaaaaatcctagg 399  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  30095715 aatttattgtttcgcccaggacaccaaaaatcttagg 30095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 36066177 - 36066217
Alignment:
Q  262 ttaattctattgaaaatatatttttagataactttgattat 302  Q
    |||||| ||||||||||||||||||||| || |||||||||    
T  36066177 ttaattgtattgaaaatatatttttagagaattttgattat 36066217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 49164914 - 49164858
Alignment:
Q  178 accacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 234  Q
    |||| |||||||  |||| || |||||||||||||| ||||||||||||| ||||||    
T  49164914 accaattttttaagggcatcataattattatttttacttagtagttagtagtatata 49164858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 1240366 - 1240554
Alignment:
Q  136 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatag 235  Q
    |||||||| ||||||||||   ||||||||| |||| | | ||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||     
T  1240366 gggtggccctgagggcgggatggaggggcggcagcccaggacaccatttttttaggggcactaaaattattatttttacttagtagttagtactatataa 1240465  T
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatata----tttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||    |||||||| ||||| ||||||||| |||| |||| ||||    
T  1240466 atatatttctttttaatccgctttgattaattctattgaaaatatatttttttttagagaacttcgattataaatgaatcttttgcaac 1240554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 8246869 - 8246760
Alignment:
Q  175 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 274  Q
    ||||||| ||||||||  ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||    
T  8246869 ggcaccatttttttag--gcaccaaaattattatttttacttaatagttagtactatatagatatatttctttttaatttgatttgattaattctattga 8246772  T
Q  275 aaatatattttt 286  Q
    ||||||||||||    
T  8246771 aaatatattttt 8246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 320
Target Start/End: Complemental strand, 23898088 - 23897908
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| |||||| ||||  ||||||||| |||| | || |||| |||||||| |||||||||||||| ||||||| |||||||||||||         
T  23898088 caggggtggccctgagggtgggcttgaggggcggcagcccagggaaccatttttttaggggcaccaaaattatcatttttacttagtagttagta----- 23897994  T
Q  233 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
     | ||||||| |||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  23897993 -atatatattcctttttaatttgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatattttgcaac 23897908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 33735884 - 33735761
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 291  Q
    ||||| |||||||||| |||||| |||||||||||| | |||| |||||||||||||||||| | |||| |||||| ||||||||||||||||||||| |    
T  33735884 ggcactaaaattattaattttatctagtagttagtattgtataaatatatttctttttaatttggtttgattaattatattgaaaatatatttttagaca 33735785  T
Q  292 actttgattataaacgaatgtttt 315  Q
    |||||||||||||| |||| ||||    
T  33735784 actttgattataaatgaatctttt 33735761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 133 - 315
Target Start/End: Original strand, 23935124 - 23935299
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| ||| || ||||  ||||||||| |||| | ||||||| |||||||| | |||||||||||  ||||||| ||||||||||||| ||||    
T  23935124 caggggtggccctgaaggtgggcttgaggggcggcagcccagggcaccatttttttagggtcaccaaaattaacatttttacttagtagttagtaatata 23935223  T
Q  233 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||      ||||||||||||  |||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  23935224 ta------tttctttttaatctgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatatttt 23935299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 305
Target Start/End: Complemental strand, 10976308 - 10976139
Alignment:
Q  134 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 233  Q
    |||| ||||| |||||| ||||  | ||||||| || | ||||||||| |||||||| |||| ||||||||||| ||||||||||| |||||| ||||||    
T  10976308 agggatggccctgagggtgggcgggcggggcggcagtccaaggcaccatttttttaggggcatcaaaattattagttttatttagtggttagtgctatat 10976209  T
Q  234 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    | |||||||  ||||||||| |||||  |  ||| ||||||||||||||||||| | |||||||||||||||    
T  10976208 aaatatatt--tttttaatttgctttcatcgattatattgaaaatatatttttataaaactttgattataaa 10976139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 29664171 - 29664307
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaa 276  Q
    ||||| |||||||| |  || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |||| |||||| | | | ||    
T  29664171 caccatttttttagggatactaaaattattatttttacttagtaattagtactatataggtatatttctttttaattcgttttgattaatt-tgtcg-aa 29664268  T
Q  277 atatatttttagataactttgattataaacgaatgtttt 315  Q
    ||||||||||||||||||| ||||||||| |||| ||||    
T  29664269 atatatttttagataacttcgattataaatgaatatttt 29664307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 35405368 - 35405459
Alignment:
Q  229 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||| ||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||| ||| |||| |||| ||||    
T  35405368 tatatatatatatttctttttaattcgctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaac 35405459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 1153858 - 1153751
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 291  Q
    ||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||||||| || ||||  ||||||||||| ||||||| |||| ||| |    
T  1153858 ggcaccacaattattatttttatttagtagttagtattaaatagttatatttgtttttaactc-ctttaattaattctattaaaaatatgttttaagaga 1153760  T
Q  292 actttgatt 300  Q
    |||||||||    
T  1153759 actttgatt 1153751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 15103150 - 15103063
Alignment:
Q  223 tagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    |||||||||||||||||||||||||||| || | |||| ||||||||||||||   ||||||||||| ||||||||||||||| ||||    
T  15103150 tagtactatatagatatatttctttttactttgttttgattaattctattgaagtaatatttttagagaactttgattataaatgaat 15103063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 3265596 - 3265472
Alignment:
Q  195 accaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataact 294  Q
    ||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||| || |||| | |||||||  ||||||||| |||| ||| ||||    
T  3265596 accaaaattattatttttacttaatagttagtattaaatagatatatttctttttaactcccttt-gataattcttatgaaaatatgttttaagagaact 3265498  T
Q  295 ttgattataaacgaatgtttttcaac 320  Q
    || ||||| || |||| |||| ||||    
T  3265497 tttattatcaatgaatcttttgcaac 3265472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 4626662 - 4626570
Alignment:
Q  193 gcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattttta 287  Q
    ||||||||||| ||| ||||| |  ||||| |||||| | ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||    
T  4626662 gcaccaaaattcttaattttactg-gtagtaagtactgtttagatat-tttctttttaattctctttgattaattctattgaaaatatattttta 4626570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 307
Target Start/End: Complemental strand, 16141645 - 16141536
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    |||| |||||||| ||||||||||||||||| |||||| | |||||| ||||||| |  ||||| | ||||||| |||||||||| |||||||||| |||    
T  16141645 caaatttattattgttatttagtagttagtattatatataaatatttgtttttaactttctttgatcaattctaatgaaaatata-ttttagataatttt 16141547  T
Q  297 gattataaacg 307  Q
     ||||| ||||    
T  16141546 aattatgaacg 16141536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 22667769 - 22667683
Alignment:
Q  136 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagt 222  Q
    |||||||  ||||||||||   ||||||||| |||||| ||||||| || ||||| ||||| |||||||||||||||||||||||||    
T  22667769 gggtggctctgagggcgggtttgaggggcggcagcctagggcaccatttatttaggggcacaaaaattattatttttatttagtagt 22667683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 49762520 - 49762471
Alignment:
Q  256 ctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  49762520 ctttgattaattctattgaaaatatatttttagagaactttgattataaa 49762471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 45385427 - 45385311
Alignment:
Q  135 ggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 234  Q
    ||||||||| |||||| ||||  ||| || || |||||| | ||||| ||| | || || | ||||||||||||||||||||||||||| ||| || ||     
T  45385427 ggggtggccctgagggtgggcgggagaggtggcagcctaggacaccattttataaggggtatcaaaattattatttttatttagtagtttgtattaaatg 45385328  T
Q  235 gatatatttctttttaa 251  Q
    |||||||||||||||||    
T  45385327 gatatatttctttttaa 45385311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 22667272 - 22667206
Alignment:
Q  249 taattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    |||||| ||| | ||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||    
T  22667272 taattcacttagattaattctattgaaaatttatttttggataactttgattataaatgaatatttt 22667206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 35204369 - 35204230
Alignment:
Q  172 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 271  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| |||||| |||||| |||||| | ||||   ||||||| | |||||| |||||| |||    
T  35204369 taagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattatataaaaatat---tttttaaattgctttgattaattatat 35204273  T
Q  272 tgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||| || ||||||||||| || ||||||||| || |||| ||||    
T  35204272 tgacaa-atatttttagagaattttgattatgaatgaatatttt 35204230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 34299147 - 34298990
Alignment:
Q  134 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 233  Q
    ||||||| || |||||| |||| |||||||||| |||| | | ||||| | |||||  ||||| |||||| ||||||||  |||||||||| ||| ||||    
T  34299147 aggggtgaccctgagggtgggctcgaggggcggcagcccaggacaccattcttttaagggcactaaaattgttatttttccttagtagttaatacgatat 34299048  T
Q  234 agata----tatttctttttaattcgctttggttaattctattgaaaatatattttta 287  Q
    |||||    ||||| ||||||| | | | |  |||||||||||||| |||||||||||    
T  34299047 agataaatatatttttttttaacttgttgtacttaattctattgaacatatattttta 34298990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 40933 - 40859
Alignment:
Q  160 ggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatata 234  Q
    |||||||  ||| ||| ||||| ||| |||| |||||||||||||||||||||| || ||||||| |||||||||    
T  40933 ggggcggccgcccaagacaccattttattaggggcaccaaaattattatttttactttgtagttaatactatata 40859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 35405285 - 35405346
Alignment:
Q  158 gaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagta 220  Q
    ||||||||| |||| | ||||||| |||||||| |||||||||||||||||||||| ||||||    
T  35405285 gaggggcggcagcccagggcacca-ttttttaggggcaccaaaattattatttttacttagta 35405346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 34258917 - 34258970
Alignment:
Q  219 tagttagtactatatagatatatttctttttaattcgctttggttaattctatt 272  Q
    |||||||| | ||||| |||||||||||||||| ||| ||||||||||||||||    
T  34258917 tagttagtgccatataaatatatttctttttaactcgttttggttaattctatt 34258970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 35384224 - 35384135
Alignment:
Q  208 tttttatttagtagttagtactatatag-atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    ||||||||||||||  | |||||||||  |||||| | |||||||||  ||||| |||||| ||||| ||||||||||||||| ||||||    
T  35384224 tttttatttagtaggcaatactatataatatatatatttttttaattatctttgattaattatattgcaaatatatttttagagaacttt 35384135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 38742443 - 38742499
Alignment:
Q  246 ttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 302  Q
    |||||| || ||||| |||  ||||||||||||||||||||||| ||||||||||||    
T  38742443 ttttaactcactttgattatatctattgaaaatatatttttagagaactttgattat 38742499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 52805976 - 52805908
Alignment:
Q  209 ttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaa 277  Q
    ||||||||||||||||||| |||||| |||||| | |||||||||| ||||  || ||| |||||||||    
T  52805976 ttttatttagtagttagtattatataaatatatatatttttaattctctttaatttattttattgaaaa 52805908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 9422290 - 9422340
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatat 233  Q
    |||||||||| ||  ||||||||||||||||||||||||||| || |||||    
T  9422290 ttttttagagacattaaaattattatttttatttagtagttaatattatat 9422340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 20756663 - 20756735
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaa 251  Q
    ||||| |||||||| |||| ||||||||||||||||| |  || |||||||| ||||| ||||||||||||||||    
T  20756663 caccaattttttag-ggcatcaaaattattatttttactcggtggttagtac-atataaatatatttctttttaa 20756735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 30717893 - 30717941
Alignment:
Q  200 aattattatttttatttagtagttagtactatatagatatatttctttt 248  Q
    |||||||||||||| |||||| ||| || ||||||||||||||| ||||    
T  30717893 aattattatttttacttagtaattaatattatatagatatatttttttt 30717941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 9699 - 9809
Alignment:
Q  195 accaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataact 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |||||||||||||| ||||    
T  9699 accaaaattattatttttatttagtagttagtactatatagatatatatctttttaattcggtttgattaattatattgagaatatatttttagaaaact 9798  T
Q  295 ttgattataaa 305  Q
    |||||||||||    
T  9799 ttgattataaa 9809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 133 - 315
Target Start/End: Complemental strand, 3193715 - 3193533
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| ||||||||||| |||||||||| |||| | ||||||| |||  ||  ||||||||||||||||||||||| |||||| |||||||| |    
T  3193715 caggggtggccctgagggcgggctcgaggggcgggagcccagggcaccattttcataagggcaccaaaattattatttttatgtagtaggtagtactaca 3193616  T
Q  233 tagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||||||||||||||||||| | ||||||  ||||| |||||||||||| |||||| | |||||||||||| || |||| ||||    
T  3193615 tagatatatttctttttaaattgctttgaataattatattgaaaatatgtttttaaagaactttgattatgaatgaatctttt 3193533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 16570639 - 16570521
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    ||||||||||||| ||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  16570639 ttttttagaggcatcaaaattattatttttacttattagttggtaccatatagatatatttctttttaattcactttgattaattctattaaaaatatat 16570540  T
Q  283 ttttagataactttgatta 301  Q
    ||||||| |||||||||||    
T  16570539 ttttagagaactttgatta 16570521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 12263800 - 12263669
Alignment:
Q  174 aggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagata--tatttctttttaattcgctttggttaattctat 271  Q
    |||||||| |||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||  | ||| |||||||||||||||| ||||||||||    
T  12263800 aggcaccatttttttaggggcaccaaaattattatttttacttaatggttagtactatatagatatttttttttttttaattcgctttgattaattctat 12263701  T
Q  272 tgaaaatatatttttagataactttgattata 303  Q
    |||||||||||||||| | |||||||||||||    
T  12263700 tgaaaatatatttttaaagaactttgattata 12263669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 134 - 310
Target Start/End: Original strand, 20870571 - 20870743
Alignment:
Q  134 aggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatat 233  Q
    |||||||||| | |||||||||  ||  ||||| ||| || ||||||| |||||||   | | |||||||||||||||||||||||||||||||||||||    
T  20870571 aggggtggccctcagggcgggcttgataggcggcagcttagggcaccatttttttaagagtatcaaaattattatttttatttagtagttagtactatat 20870670  T
Q  234 agatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    |    |||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  20870671 a----tatttctttttaattccctttgattaattttattgataatatatttttagataactttgattataaatgaat 20870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 32257828 - 32257701
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    ||||||||  ||| |||||| |||||||||| ||||||||||||| || |||||||||||| ||||||||| |||||| |||||| |||||||||||||     
T  32257828 ttttttaggagcatcaaaataattatttttacttagtagttagtattacatagatatatttttttttaatttgctttgattaattttattgaaaatatac 32257729  T
Q  283 ttttagataactttgattataaacgaat 310  Q
    ||||||| ||||||||||||||| ||||    
T  32257728 ttttagagaactttgattataaatgaat 32257701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 197 - 315
Target Start/End: Original strand, 502805 - 502920
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||||||| ||||||    
T  502805 caaaattattatttttacttag-agttagtattatatagatatatttctttttaactc--tttgattaattctattgaaaatatatttttagagaacttt 502901  T
Q  297 gattataaacgaatgtttt 315  Q
    |||||| || |||| ||||    
T  502902 gattatgaatgaatctttt 502920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 3597071 - 3596934
Alignment:
Q  166 gtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaa 265  Q
    |||| ||| ||||||| |||||||| || | |||||||||||||||||||||||| |||||| |||   ||||||||||||||||||||| |||| ||||    
T  3597071 gtagtctagggcaccagttttttag-ggtatcaaaattattatttttatttagtaattagtattattgtgatatatttctttttaattcgttttgattaa 3596973  T
Q  266 ttctattgaaaatatatttttagataactttgattataa 304  Q
    ||||||| |||||||||||||| | || ||||| |||||    
T  3596972 ttctattaaaaatatatttttataaaaatttgaatataa 3596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 132 - 302
Target Start/End: Original strand, 18600127 - 18600292
Alignment:
Q  132 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 231  Q
    |||||||| ||| |||||| ||||  ||| |||||| ||| | ||||||| |||| ||| |||| |||||||||||||||||| ||||||||| ||        
T  18600127 tcaggggtagccctgagggtgggcgggagaggcggtggcccagggcaccaattttataggggcatcaaaattattatttttatatagtagttatta---- 18600222  T
Q  232 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 302  Q
     ||||||| ||||||||| | ||| |||| |||||| |||||||||||| |||||||| ||||||||||||    
T  18600223 -tagatatctttctttttgaatcgatttgattaattatattgaaaatatgtttttagagaactttgattat 18600292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 7886702 - 7886634
Alignment:
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataa 304  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  7886702 atatgtttctttttaattcgctttgattaattctattgaaaatatatgtttagataactttgattataa 7886634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 16569429 - 16569321
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    ||||||||||||||||| ||||||| || || ||||||| ||||||||||||||| || | || |||||||||||||||||||| |||||||| ||| ||    
T  16569429 caaaattattatttttacttagtaggtaatattatataggtatatttctttttaactcccatttgttaattctattgaaaatatgtttttagaaaacctt 16569330  T
Q  297 gattataaa 305  Q
    || ||||||    
T  16569329 gaatataaa 16569321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 7887327 - 7887264
Alignment:
Q  186 tttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttcttttt 249  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  7887327 tttaggggcaccaaaattattatttttacttagtagttagtactatatagatatgtttcttttt 7887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 18626684 - 18626771
Alignment:
Q  223 tagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||| |||||||||||||||||||| || | |||| |||||||||||||| | |||||||| || ||||||||||||||| ||||    
T  18626684 tagtactgtatagatatatttctttttactttgttttgattaattctattgaagaaatattttttgagaactttgattataaatgaat 18626771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 320
Target Start/End: Complemental strand, 25034480 - 25034359
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttg 297  Q
    |||||||||||||||||| | ||||||   ||||||||||||||||||||| |||| | |||| |||||| |||| ||||| |||||||||| ||||||     
T  25034480 aaaattattatttttattcaatagttaacgctatatagatatatttcttttaaatt-ggtttgattaattgtattaaaaatgtatttttagaaaacttta 25034382  T
Q  298 attataaacgaatgtttttcaac 320  Q
    || ||||| |||| |||| ||||    
T  25034381 ataataaatgaattttttgcaac 25034359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 10325766 - 10325717
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatat 241  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  10325766 ggcaccaaaattattatttttacttagttgttagtactatatatatatat 10325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 302
Target Start/End: Original strand, 39542405 - 39542514
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagata 291  Q
    |||| |||||||||||||||||  ||||||||||||||||||  |||||| | |||||||  ||  ||  || ||| |||||||||||| |||||| | |    
T  39542405 ggcatcaaaattattatttttacgtagtagttagtactatatgaatatatat-tttttaaagcgtgtttattgattatattgaaaatatgtttttaaaga 39542503  T
Q  292 actttgattat 302  Q
    |||||||||||    
T  39542504 actttgattat 39542514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 402
Target Start/End: Original strand, 20870791 - 20870835
Alignment:
Q  358 ggtacaatttattgtttcgtccaggacaccaaaaatcctaggacc 402  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||    
T  20870791 ggtacaatttattgtttcgtccagggcactaaaaattctaggacc 20870835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 8934060 - 8934149
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 289  Q
    ||||||||||||| |||||| ||||||||  || ||| |||||||| ||||||| ||  |||| |||||| ||||||| |||||||||||||    
T  8934060 aaaattattatttatatttaatagttagt-gtacatatatatattt-tttttaactcattttgattaattatattgaagatatatttttaga 8934149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 36161044 - 36161086
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatat 239  Q
    |||||||||||||||||| ||||||||| || |||||||||||    
T  36161044 caaaattattatttttatgtagtagttaatattatatagatat 36161086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 394
Target Start/End: Complemental strand, 25034312 - 25034283
Alignment:
Q  365 tttattgtttcgtccaggacaccaaaaatc 394  Q
    ||||||||||||||||||||||||||||||    
T  25034312 tttattgtttcgtccaggacaccaaaaatc 25034283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 11383528 - 11383716
Alignment:
Q  133 caggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactata 232  Q
    ||||||||||| ||||||  |||  ||||||||| |  | | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  11383528 caggggtggccctgagggaaggcttgaggggcggaattccagggcaccacttttttag-ggcaccaaaattattatttttatttagtagttagtaatata 11383626  T
Q  233 tagatatatttcttt--ttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    || |||||| | | |  ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  11383627 tatatatatatatatctttaattcgctttgattaattcaattgaaaaaatatttttagataactttgattataaatgaatattttgcaac 11383716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 15670852 - 15671031
Alignment:
Q  131 ttcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtacta 230  Q
    ||||||||||||| |||||||||||  |||||| || || | | ||||||| || ||| | |  |  |||||||||||||||| |||||||||| ||| |    
T  15670852 ttcaggggtggccctgagggcgggcgggaggggtggcagtccagggcaccaattattttgggaaagtaaaattattatttttacttagtagttattacaa 15670951  T
Q  231 tatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  15670952 tatagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagaaaactttgattataaatgaat 15671031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 33510226 - 33510103
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||    
T  33510226 caaaattattatttttacttagtagttagtgctacatagatatatttctttttaattcgttttgattaattccattgaaaatatatttttagagaacttt 33510127  T
Q  297 gattataaacgaatgtttttcaac 320  Q
     |||||||| |||| |||| ||||    
T  33510126 aattataaatgaatcttttgcaac 33510103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 2758068 - 2758194
Alignment:
Q  190 gaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 289  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| | | |||| ||| ||||| |||| ||||||||||| |    
T  2758068 gaggcaccaaaattattatttttaattagtagttagtactatataaacatatttctttttaactagttttgattatttctaatgaatatatatttttaca 2758167  T
Q  290 taactttgattataaacgaatgttttt 316  Q
    |||| ||| |||| || |||| |||||    
T  2758168 taaccttggttatgaatgaatcttttt 2758194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 54417151 - 54417033
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    ||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||| |||||| | || |||    
T  54417151 caaaattattatttttacttggtagttagtgctatatagatacatttccttttaattcactttgattaattctactgaaaatatgtttttaaagaatttt 54417052  T
Q  297 gattataaacgaatgtttt 315  Q
    ||||||||| |||| ||||    
T  54417051 gattataaatgaatctttt 54417033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 27538879 - 27538791
Alignment:
Q  232 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||| |||| ||||    
T  27538879 atagatatatttatttttaattctctttgattaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaac 27538791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 27541226 - 27541151
Alignment:
Q  168 agcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatattt 243  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||    
T  27541226 agcctaaagcaccacttttttaggggcatcaaaattattatttttatttagtaattagtaatatatagatatattt 27541151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 33682780 - 33682673
Alignment:
Q  208 tttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacg 307  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| | ||| |||| |||||| |    
T  33682780 tttttacttaatagttagtactagatagatatatttctttttaattcactttgattaattctattaaaaatatttttttaaagaaccttgactataaagg 33682681  T
Q  308 aatgtttt 315  Q
    ||| ||||    
T  33682680 aatctttt 33682673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 19149984 - 19149892
Alignment:
Q  192 ggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattt 284  Q
    |||| ||||||| ||||||||||||| |||||| || | |||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  19149984 ggcatcaaaatttttatttttatttaatagttaataatttataaatatatttctttttaattcgctttgattaattatatcgaaaatatattt 19149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 52706855 - 52706727
Alignment:
Q  132 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactat 231  Q
    ||||| |||||| ||||||||| |  |||||||| ||| ||| | ||||| |||||||  || | ||||||||||||||||||||||||||   ||| ||    
T  52706855 tcaggagtggccctgagggcggacgggaggggcgatagtctaggacaccatttttttaagggtatcaaaattattatttttatttagtagtctttacaat 52706756  T
Q  232 atagatatatttctttttaattcgctttg 260  Q
    |||||||||||||||||||||| ||||||    
T  52706755 atagatatatttctttttaatttgctttg 52706727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 47000946 - 47000872
Alignment:
Q  245 tttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |||| |||| ||||    
T  47000946 tttttaattcgctttgattaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaac 47000872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 168834 - 168697
Alignment:
Q  175 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattga 274  Q
    ||||||| || |||||  |||||| |||||||||||| | |||||||| || |||||||| |||||||  ||||||| ||||| || |||||||||||||    
T  168834 ggcaccatttgtttagttgcaccataattattatttt-acttagtagtcagcactatataaatatatta-tttttaactcgctgtgattaattctattga 168737  T
Q  275 aaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||||||| ||||||| ||| |||||||| || |||| ||||    
T  168736 aaatata-ttttagagaaccttgattatgaatgaatctttt 168697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 11365079 - 11365170
Alignment:
Q  229 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||| |||||| | | || ||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||| |||| |||| ||||    
T  11365079 tatatatatatatatatattgaattcgctttgattaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaac 11365170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 17713251 - 17713390
Alignment:
Q  172 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 271  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| |||||| |||||  |||||||| ||||   ||||||| | |||||| |||||| |||    
T  17713251 taagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttatatagaaatat---tttttaaattgctttgattaattatat 17713347  T
Q  272 tgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||| || ||||||||||| || ||||||||| || |||| ||||    
T  17713348 tgacaa-atatttttagagaattttgattatgaatgaatatttt 17713390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 19014480 - 19014619
Alignment:
Q  172 taaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 271  Q
    |||| ||||| ||| ||| || || ||||||||||||||||| |||||| |||||  |||||||| ||||   ||||||| | |||||| |||||| |||    
T  19014480 taagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttatatagaaatat---tttttaaattgctttgattaattatat 19014576  T
Q  272 tgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    ||| || ||||||||||| || ||||||||| || |||| ||||    
T  19014577 tgacaa-atatttttagagaattttgattatgaatgaatatttt 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 39838466 - 39838550
Alignment:
Q  194 caccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatat 280  Q
    |||||||||||||  ||||| ||| ||||||||||| |||| |||||||||||||||| ||  | || |||||| ||||||||||||    
T  39838466 caccaaaattatt--ttttaattactagttagtactgtataaatatatttctttttaactcattatgattaattatattgaaaatat 39838550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 8266744 - 8266618
Alignment:
Q  177 caccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggtt-aattctattgaa 275  Q
    ||||| ||||| | ||||||||||||||| |||||||  || ||||||||| ||||||| |||||||  |||||| ||  |||| || || |||| ||||    
T  8266744 caccattttttaaaaggcaccaaaattatgatttttacgtaatagttagtattatataggtatattttcttttaactctgtttgattaaactctactgaa 8266645  T
Q  276 aatatatttttagataactttgattat 302  Q
    ||||| |||| ||| ||| ||||||||    
T  8266644 aatatgttttcagagaaccttgattat 8266618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 42417901 - 42417977
Alignment:
Q  171 ctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttt 248  Q
    ||||||||||| || ||||| ||||  | |||||||||||||| |||||||||| ||||||||| |||||||| ||||    
T  42417901 ctaaggcaccatttgtttag-ggcattataattattatttttacttagtagttaatactatataaatatatttgtttt 42417977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 27538753 - 27538709
Alignment:
Q  358 ggtacaatttattgtttcgtccaggacaccaaaaatcctaggacc 402  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||    
T  27538753 ggtacaatttattgtttcatccaagacaccaaaaatcttaggacc 27538709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 7741724 - 7741790
Alignment:
Q  223 tagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 289  Q
    ||||| |||| |||||||||||||||||| ||  |||| |||||| | |||||||||| ||||||||    
T  7741724 tagtattatagagatatatttctttttaactcattttgattaattttgttgaaaatatgtttttaga 7741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 11383751 - 11383788
Alignment:
Q  357 gggtacaatttattgtttcgtccaggacaccaaaaatc 394  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  11383751 gggtacaatttatagtttcgtccagggcaccaaaaatc 11383788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 168 - 315
Target Start/End: Original strand, 5163763 - 5163910
Alignment:
Q  168 agcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaatt 267  Q
    |||||| ||||| | | |||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||| ||||||    
T  5163763 agcctagggcactattattttaggggcatcaaaattattatttttacttagtagttagtactatataaatatatatctttttaattcggtttgattaatt 5163862  T
Q  268 ctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
     |||||| |||||  ||||||| ||||||||||||||| |||| ||||    
T  5163863 atattgagaatattattttagaaaactttgattataaatgaatctttt 5163910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 30257932 - 30257801
Alignment:
Q  175 ggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtacta-tatagatatatttctttttaattcgctttggttaattctattg 273  Q
    ||||||| | ||||| ||||| |||||||||| |||||| ||| |||||| ||||| |||||||||||||||||| |||||| |||| |||||| |||||    
T  30257932 ggcaccattattttaaaggcatcaaaattattttttttacttaatagttaatactaatatagatatatttcttttcaattcggtttgattaattatattg 30257833  T
Q  274 aaaatatatttttagataactttgattataaa 305  Q
    |||||||||||||||| |||||||||||||||    
T  30257832 aaaatatatttttagagaactttgattataaa 30257801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 28556734 - 28556621
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataacttt 296  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||| |||| |||||| |||| |||||||||||||| | ||||||    
T  28556734 caaaattattatttttacttagtagttagtactatatagatacatttcgtttaaattcggtttgattaattatattaaaaatatatttttaaagaacttt 28556635  T
Q  297 gattataaacgaat 310  Q
    ||| ||||||||||    
T  28556634 gatgataaacgaat 28556621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 38561838 - 38561954
Alignment:
Q  193 gcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataa 292  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| | |||| ||||||| ||||||||||| |||||||| ||    
T  38561838 gcaccgaaattattatttttatttagtagttattacaatatagatacatttctttttaatttgttttgattaattc-attgaaaatatttttttagagaa 38561936  T
Q  293 ctttgattataaacgaat 310  Q
    |||| |||||||| ||||    
T  38561937 ctttcattataaatgaat 38561954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 169 - 302
Target Start/End: Complemental strand, 40877082 - 40876949
Alignment:
Q  169 gcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattc 268  Q
    ||||| || |||| |||||||| | |||||||||||||||||||| || |||||||||| |||||| |||||||||||||||| | | || | |||||||    
T  40877082 gcctagggtaccaattttttagggacaccaaaattattatttttacttggtagttagtattatataaatatatttctttttaacttgtttggattaattc 40876983  T
Q  269 tattgaaaatatatttttagataactttgattat 302  Q
    ||||||||||||||||||| | ||| ||||||||    
T  40876982 tattgaaaatatatttttatagaaccttgattat 40876949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 28148887 - 28148996
Alignment:
Q  195 accaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataact 294  Q
    ||||||||||||| |||||| ||||| ||||||||||| |||||||| | ||||||||||| |||| |||||| ||||||||||| ||||||| | ||||    
T  28148887 accaaaattattacttttatatagtaattagtactatagagatatatat-tttttaattcgttttgattaattatattgaaaataaatttttaaagaact 28148985  T
Q  295 ttgattataaa 305  Q
    |||||||||||    
T  28148986 ttgattataaa 28148996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 1241111 - 1241212
Alignment:
Q  191 aggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagat 290  Q
    |||||||||||||||||| |||| ||  || ||||||  ||||| ||||||||| |||| | || |||||||||||||||||||||||||||||||||||    
T  1241111 aggcaccaaaattattatgtttacttcttatttagtaaaatatacatatatttccttttgactcactttggttaattctattgaaaatatatttttagat 1241210  T
Q  291 aa 292  Q
    ||    
T  1241211 aa 1241212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 36186700 - 36186631
Alignment:
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  36186700 atatatttctttttaattctctttgattaattatattgaaaatatatttttagagaactttgattataaa 36186631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 310
Target Start/End: Complemental strand, 17271406 - 17271276
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttct---ttttaattcgctttggttaattctattgaaaata 279  Q
    |||||||| || ||||||||||||||||||| |||||||| ||||  |||||||||||| | |   |||| ||| | |||| |||||| |||||||||||    
T  17271406 ttttttaggggtaccaaaattattatttttacttagtagtcagtataatatagatatatatatattttttcatttgttttgattaattatattgaaaata 17271307  T
Q  280 tatttttagataactttgattataaacgaat 310  Q
    |||||||||  ||||||||||||||| ||||    
T  17271306 tatttttagcaaactttgattataaatgaat 17271276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 305
Target Start/End: Original strand, 16547626 - 16547772
Alignment:
Q  161 gggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat--ttctttttaattcgctt 258  Q
    |||||||||||||  |||||| | |||||| |||||||| ||||| |||  || |  |||||| |||||||||||||||||  || ||||||||| | ||    
T  16547626 gggcggtagcctagagcaccattgttttaggggcaccaatattatcattagtactcggtagttggtactatatagatatatatttttttttaatttggtt 16547725  T
Q  259 tggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    || |||||| ||||||||||||  ||||||| |||||||||||||||    
T  16547726 tgattaattatattgaaaatattattttagaaaactttgattataaa 16547772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 16648025 - 16647942
Alignment:
Q  135 ggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttag 218  Q
    ||||||||| |||||||||||||||||||||| | || | ||||||| |||||||| |||| ||||||||||||||||||||||    
T  16648025 ggggtggccgtgagggcgggcacgaggggcggcaacccagggcaccatttttttaggggcatcaaaattattatttttatttag 16647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 18830100 - 18829984
Alignment:
Q  200 aattattatttttatttagtagttagtactatatagatatatttct-ttttaattcgctttggttaattctattgaaaatatatttttagataactttga 298  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||| ||||||   ||| || |||||| ||||||||||||||||||||| |||  |||    
T  18830100 aattattatttttacttagtgggtagtactatatagatatatttcttttttaacatgctatgattaattttattgaaaatatatttttagagaacaatga 18830001  T
Q  299 ttataaacgaatgtttt 315  Q
    |||| || |||| ||||    
T  18830000 ttatgaatgaatttttt 18829984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 37912332 - 37912416
Alignment:
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    |||||| |||||||||||||||||| || ||||| |||||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  37912332 atatatatctttttaattcgctttgatttattctcttgaaaatatatttttgggtaactttgattataaatgaatattttgcaac 37912416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 36507000 - 36506909
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttaga 289  Q
    ||||| |||||||||| ||||||||||||| |||||||| |||||| ||||||| || ||||| || |||||||||||||||  ||||||||    
T  36507000 aaaatcattatttttaattagtagttagtattatatagaaatatttgtttttaactctctttgattgattctattgaaaatacgtttttaga 36506909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 16647053 - 16646975
Alignment:
Q  232 atagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaat 310  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||| || ||| |||||||| ||||    
T  16647053 atagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaat 16646975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 136 - 305
Target Start/End: Complemental strand, 2887217 - 2887046
Alignment:
Q  136 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatt------tagtagttagtact 229  Q
    |||||||| |||||| |||   ||||||||| |  ||| ||||||| | |||||| || ||||||||||||||||| |||      ||||  ||||| ||    
T  2887217 gggtggccctgagggtgggtgggaggggcggcaatctagggcaccattattttaggggtaccaaaattattattttaattactaattagtgattagtgct 2887118  T
Q  230 atatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    ||||||||    || ||||||||||| |||| ||||||||||| |||| ||||||||||| |||||||||||||||    
T  2887117 atatagat----ttttttttaattcgttttgattaattctattaaaaaaatatttttagagaactttgattataaa 2887046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 18197324 - 18197426
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatat 282  Q
    |||||||  |||| ||||||||||||||||| ||  ||||||||| ||| || |||||||||||||||| ||| ||||||||| |||| ||||||||| |    
T  18197324 ttttttattggcatcaaaattattatttttacttgatagttagtattat-tacatatatttctttttaactcgttttggttaagtctactgaaaatattt 18197422  T
Q  283 tttt 286  Q
    ||||    
T  18197423 tttt 18197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 4206415 - 4206345
Alignment:
Q  250 aattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttttcaac 320  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||||| |||| |||| ||||    
T  4206415 aattcgctttgattaattctatttaaaaaatacttttagataactttaattataaatgaatattttgcaac 4206345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 4206705 - 4206647
Alignment:
Q  183 ttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 241  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||    
T  4206705 ttttttaggggcaccaaaattattatatttacttagtagttagtaatatatatatatat 4206647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 14951642 - 14951700
Alignment:
Q  190 gaggcaccaaaattattatttttatttagtagttagtactatatagatatatttctttt 248  Q
    |||||||||| |||| |||||||||||||||||||||| | ||||||||||||| ||||    
T  14951642 gaggcaccaagattaatatttttatttagtagttagtaatttatagatatatttttttt 14951700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 15925456 - 15925559
Alignment:
Q  176 gcaccacttttttagaggcaccaaaattattatttttatttagta--gttagtactatatagatatatttctttttaattcgctttggttaattctattg 273  Q
    |||||| ||||| || || | ||||||||||||||||| || |||  || |||| | ||||||||||||||||||||| |||||||  |||||| |||||    
T  15925456 gcaccattttttaaggggtatcaaaattattatttttactttgtattgtaagtattgtatagatatatttctttttaactcgctttaattaattatattg 15925555  T
Q  274 aaaa 277  Q
    ||||    
T  15925556 aaaa 15925559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 28226877 - 28226833
Alignment:
Q  195 accaaaattattatttttatttagtagttagtactatatagatat 239  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  28226877 accaaaattattatttttatttagtagttaatattatatagatat 28226833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 37911367 - 37911459
Alignment:
Q  132 tcaggggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagtta 224  Q
    |||||||||||| |||| |||| |  ||||||||| |||| | | ||||| || ||||| |||||||||||||||||||||  ||||||||||    
T  37911367 tcaggggtggccctgagcgcggccttgaggggcggcagcccaggacaccatttatttaggggcaccaaaattattatttttgcttagtagtta 37911459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 318
Target Start/End: Complemental strand, 35281068 - 35280938
Alignment:
Q  191 aggcaccaaaattattatttttatttagtagttagtactatatagata--tatt-tctttttaattcgctttggttaattctattgaaaatatattttta 287  Q
    |||| ||| ||| |||||||||| ||| ||||||||| | ||||||||  |||| | ||||||| | | |||| ||||||||||||||||||||||||||    
T  35281068 aggctccagaatgattatttttacttaatagttagtattgtatagatacatattatttttttaacttgatttgattaattctattgaaaatatattttta 35280969  T
Q  288 gataactttgattataaacgaatgtttttca 318  Q
     |||| | | ||||| || |||| |||||||    
T  35280968 aataattatcattatgaatgaatctttttca 35280938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 6621319 - 6621395
Alignment:
Q  197 caaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattg 273  Q
    ||||||||||||||| |||| ||||||| ||  ||||  |||||||||||||||| || ||||| |||||| |||||    
T  6621319 caaaattattattttcatttggtagttaatagcatatgcatatatttctttttaactccctttgattaattttattg 6621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 34345961 - 34346036
Alignment:
Q  229 tatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    |||||||||||||||||||| |||| | |||| ||| || ||||||||||||||||||| | || ||||||| ||||    
T  34345961 tatatagatatatttctttt-aatttggtttgattagttatattgaaaatatatttttatagaattttgattctaaa 34346036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 38134049 - 38134159
Alignment:
Q  175 ggcaccacttttttagaggcaccaaaattattatttttat--ttagtagttagtactatatagatatatttctttttaattcgctttggttaattctatt 272  Q
    ||||||| || ||||||| ||| ||||| ||||||||| |  ||||||||||||| || ||| ||||  |||||||||| ||| |||| |||||| ||||    
T  38134049 ggcaccaattctttagagacactaaaataattatttttttacttagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatatt 38134146  T
Q  273 gaaaatatatttt 285  Q
     ||||||| ||||    
T  38134147 aaaaatatttttt 38134159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 33819262 - 33819217
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatattt 243  Q
    ||||||||||||||||||||  |||| |||||| ||||||||||||    
T  33819262 aaaattattatttttatttaaaagttggtactacatagatatattt 33819217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 44157246 - 44157320
Alignment:
Q  226 tactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattat 302  Q
    ||||||||| ||||||||  ||| |||| |||||| |||||||||||  ||||||||||||||| ||  ||||||||    
T  44157246 tactatataaatatattt--tttcaatttgctttgattaattctattagaaatatatttttagagaaacttgattat 44157320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 34909480 - 34909424
Alignment:
Q  185 ttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatat 241  Q
    |||||| ||||  |||||||||||||||| ||| ||||||||| |||||| ||||||    
T  34909480 ttttaggggcattaaaattattatttttacttactagttagtaatatatatatatat 34909424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 136 - 315
Target Start/End: Original strand, 5785 - 5963
Alignment:
Q  136 gggtggccttgagggcgggcacgaggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatag 235  Q
    |||||||| |||||||||||  ||||||||| |||| |||||||||  ||  ||  |||||||||||||||||||||||  |||||||||||||| ||||    
T  5785 gggtggccctgagggcgggctagaggggcgggagcccaaggcaccatcttcatatgggcaccaaaattattatttttatg-agtagttagtactacatag 5883  T
Q  236 atatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttgattataaacgaatgtttt 315  Q
    |||||||||||| ||| | |||||| |||||| |||||||||||| |||||| | || ||||||||| || |||| ||||    
T  5884 atatatttctttctaaattgctttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatttttt 5963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 289
Target Start/End: Original strand, 65000 - 65132
Alignment:
Q  159 aggggcggtagcctaaggcaccacttttttagaggcaccaaaattattatttttatttagtagttagtactatatagatatatttcttttt---aattcg 255  Q
    |||| |||||| | ||||||||| |||||||| ||||| ||||||||||| |||| |||||| ||||||| ||| ||||| |||| |||||   |||| |    
T  65000 agggacggtagtccaaggcaccatttttttaggggcac-aaaattattatatttacttagtaattagtacaataaagatagattttttttttttaatttg 65098  T
Q  256 ctttggttaattctattgaaaatatatttttaga 289  Q
    ||||| |||||||||||||||||||||| |||||    
T  65099 ctttgattaattctattgaaaatatattgttaga 65132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 327934 - 328020
Alignment:
Q  198 aaaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatattttt 286  Q
    ||||||||||| ||||||||||| || ||| |||||| |||||||||  ||||| || ||||| ||||||||||| ||||||| |||||    
T  327934 aaaattattatgtttatttagtaattggtagtatatacatatatttc--tttaactcactttgattaattctattaaaaatattttttt 328020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 380 - 436
Alignment:
Q  249 taattcgctttggttaattctattgaaaatatatttttagataactttgattataaa 305  Q
    |||||| ||||  ||||||| |||||||| |||||||||||||||||||||||||||    
T  380 taattcactttaattaattcaattgaaaaaatatttttagataactttgattataaa 436  T

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Target: scaffold1173; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 493 - 525
Alignment:
Q  361 acaatttattgtttcgtccaggacaccaaaaat 393  Q
    ||||||||| |||||||||||||||||||||||    
T  493 acaatttatagtttcgtccaggacaccaaaaat 525  T

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Target: scaffold0527 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 1711 - 1753
Alignment:
Q  263 taattctattgaaaatatatttttagataactttgattataaa 305  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  1711 taattttattgaaaatatatttttagagaactttgattataaa 1753  T

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Target: scaffold0527; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 9774 - 9816
Alignment:
Q  263 taattctattgaaaatatatttttagataactttgattataaa 305  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  9774 taattttattgaaaatatatttttagagaactttgattataaa 9816  T

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Target: scaffold1702 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1702
Description:

Target: scaffold1702; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 320 - 421
Alignment:
Q  199 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctattgaaaatatatttttagataactttga 298  Q
    ||||| ||||||| || ||||||||| ||| |||||||||||||| | |||||||| ||||   |||||  ||| ||||||||||||| |  ||||||||    
T  320 aaattgttattttcatgtagtagttattacaatatagatatatttttctttaattcactttcactaattaaattaaaaatatattttttgtaaactttga 419  T
Q  299 tt 300  Q
    ||    
T  420 tt 421  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 18557 - 18629
Alignment:
Q  199 aaattattatttttatttagtagttagtactatatagatatatttctttttaattcgctttggttaattctat 271  Q
    |||||| |||||||| ||| ||||||||  |||||| || ||||||||||||| | ||||||  |||||||||    
T  18557 aaattaatatttttacttattagttagtggtatatacatgtatttctttttaacttgctttgaataattctat 18629  T

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