View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_56 (Length: 476)
Name: NF13763_high_56
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_56 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 7377071 - 7377456
Alignment:
| Q |
11 |
catcatacacacatgaggtttcttcctattttctgt-tttttaattattagagtataggatcagtctcaataaattaattacagttagtttgttaagaat |
109 |
Q |
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| T |
7377071 |
catcatacacacatgaggtttcttcctattttctctgtttttaattattagagtataggatcagtctcaataaattaattacagttagtttgttaagaat |
7377170 |
T |
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| Q |
110 |
aacaaactaactaaactagcaatttttctgtttaatgtgtgtcctttcaaatgataatgtga--------gcccaaccataatttataagaggcataata |
201 |
Q |
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| T |
7377171 |
aacaaactaactaaactagcaatttttctgtttaatgtgtgtcctttcaaatgataatgtgactatgtgagcccaactataatttctaagaggcataata |
7377270 |
T |
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| Q |
202 |
gacttggtcattctcatgcaaaagttgttaaatcagttatgcaactatacaaaacatctttcatcaataaaaatgtttctatgttgtgtcatgcctaggt |
301 |
Q |
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| T |
7377271 |
gacttggtcattctcatgcaaaagttgttaaatcagttatgcaactatacaaaacatctttcatcaataaaaatgtgtctatgttatgtcatgcctaggt |
7377370 |
T |
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| Q |
302 |
aaatctcgcannnnnnnnn-------gctttcctattggtttcagcatattcgaagctctcaaagttattcatgctcatcaccattg |
381 |
Q |
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| T |
7377371 |
aaatctcgcattttttttttttttttgctttactatttgtttca-catatttgaagctcttaaagttattcatgctcatcaccattg |
7377456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 391 - 466
Target Start/End: Original strand, 7377554 - 7377629
Alignment:
| Q |
391 |
ctttcaagcactccaacaaatttttaagttcattcacactaaatttttaatcaatattaaagatgttcaaagtgat |
466 |
Q |
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| T |
7377554 |
ctttcaagcactccaacaaatttttaagttcattcacactaaatttttaatcaatattaaagatgttcaaagtgat |
7377629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 7368088 - 7368197
Alignment:
| Q |
28 |
gtttcttcctattttctgttttt-taat-tattagagtataggatcagtctcaataaattaattacagttagtttgttaagaataacaaactaactaaac |
125 |
Q |
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||||||||||||||||| | ||| |||| |||||||||||| |||| ||||||||| ||| ||| || | | | |||||||||||||||| |||||||| |
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| T |
7368088 |
gtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggttgctcgttaagaataacaaaccaactaaac |
7368187 |
T |
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| Q |
126 |
tagcaatttt |
135 |
Q |
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|| ||||||| |
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| T |
7368188 |
taacaatttt |
7368197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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