View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_6 (Length: 811)
Name: NF13763_high_6
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 798
Target Start/End: Original strand, 29561171 - 29561967
Alignment:
| Q |
1 |
attgcgtgcctccttcgcctgataatgttaggacgtgtactttttatgttagaactgatcagcattcattcaagcgattagttttctcagcatttgaaga |
100 |
Q |
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|||| |||||| ||||||||||||||||||| || |||| |||||| ||||||||| |||||| |||||||||| ||| ||||||||||||||||||||| |
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| T |
29561171 |
attgtgtgccttcttcgcctgataatgttagtacatgtaatttttacgttagaactaatcagcgttcattcaagtgataagttttctcagcatttgaaga |
29561270 |
T |
|
| Q |
101 |
aagatggcaatgcaaagggaaaactgctttgccattttgctgcctcatcaacaacgacgagttgtttccaatgtcttggaacggcattcgctttggaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||| ||||||||||||||||||||||| |||||||| |
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| T |
29561271 |
aagatggcaatgcaaagggaaaactgctttgccattctgctgcctcgtcaacaatgaagagttgttcccaatgtcttggaacggcattcgttttggaact |
29561370 |
T |
|
| Q |
201 |
agtaatccacctctagcagcatgnnnnnnnctttctccattccttaaaacctcactgtgttttctgttttctgtaacattactacttttctcctttgagc |
300 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
29561371 |
agtagtccacctctagcagcatgtgtttttctttctccattccttaaaacctcaccgtgttttctgttttctgtaacattgctacttttttcctttgagc |
29561470 |
T |
|
| Q |
301 |
tgcaaactactattcgcttctcaaactctttctgtgtatccaatggaaccggtggacatttcgtccccttaactacattttgttcattctggaacttttc |
400 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561471 |
tgcaaattactattcgcttctcaaactctttctgtgtatccaatggaaccggtggacatttcgtccccttaactacattttgttcattctggaacttttc |
29561570 |
T |
|
| Q |
401 |
aaaatcaacacagagcatggaaagtttttcttcaatctcatttttcttactttctgatgaaagagccctttgtttccactcttgcacctgtgtgaaagaa |
500 |
Q |
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| T |
29561571 |
aaaatcaacacagagcatggaaagttttgcttcaatctcatttttcttactttctgatgaaagagccctttgtttccactcttgcacctgtgtgaaagaa |
29561670 |
T |
|
| Q |
501 |
aatacaaaagttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatgtaagaataaactttatcttac |
600 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561671 |
aatacaaa-gttaatgcaaacaggaagcgccagaaataaacgactagaagtaaacacggtcctaagaggttgttgaatgtaagaataaactttatcttac |
29561769 |
T |
|
| Q |
601 |
atcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttcttccatctcttccctcacctgg |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561770 |
atcattgtgtagagattggatttgagaatcagaatgcaaggcgcgatctttccagaaatctcgtgaagcctgcagttcttccatctcttccctcacctgg |
29561869 |
T |
|
| Q |
701 |
cctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgcaatgtcctgaacacaggtt |
798 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29561870 |
cctagcatctcctgcatttgggaccattgttctgtctcaactctaacttgctccactattcttcttacaatagtcttgcaatgtcctgaacacaggtt |
29561967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 29557405 - 29557541
Alignment:
| Q |
35 |
gtgtactttttatgttagaactgatcagcattcattcaagcgattagttttctcagcatttgaagaaagatggcaatgcaaagggaaaactgctttgcca |
134 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||| | | ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
29557405 |
gtgtaatttttatgttagaacttatcagcattcattcaagtgctaagttt-ctcagcatttgaagaaatatggcaatgcaaagagaaaactgctttgcca |
29557503 |
T |
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| Q |
135 |
ttttgctgcctcatcaacaacgacgagttgtttccaatg |
173 |
Q |
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| || ||| |||||||||| |||||||| ||||||||| |
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| T |
29557504 |
ctctg-tgcttcatcaacaatgacgagttatttccaatg |
29557541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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