View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_61 (Length: 460)
Name: NF13763_high_61
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_61 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 34809851 - 34809755
Alignment:
| Q |
353 |
catgctcaataacagacccacaaaccaatcatggaatatcaaaacaaaaaataacataagtaatttttcctaagaaaatataggtcttgatatgatg |
449 |
Q |
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| T |
34809851 |
catgctcaataacagacccacaaaccggtcatggaatatcaaaacaaaaaataacacaagtaatttttcctaagaaaatataggtcttgataggatg |
34809755 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 37726454 - 37726508
Alignment:
| Q |
299 |
ttattacttacatcttttacaaaatcatcctatgtcatatgctacatatgtttgc |
353 |
Q |
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| T |
37726454 |
ttattacttgcatcctttacaaaattatcctaggtgatctgctacatatgtttgc |
37726508 |
T |
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