View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_64 (Length: 450)
Name: NF13763_high_64
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 36813163 - 36813462
Alignment:
| Q |
1 |
actgttagctagatctgattgaacgacaatgatcgatgacatggagtcgtggaaaaatattcaacgacaggtttctcgggttatttttgaaaatgcttta |
100 |
Q |
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| T |
36813163 |
actgttagctagatctgattgaacgacaatgatcgatgacatggagtcgtggaaaaatattcaacgacaggtttctcgggttatttttgaaaatgcttta |
36813262 |
T |
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| Q |
101 |
aagactaagagctagcttgttcatgaattgacattttgccatttaaaagtctaaacgatcagtgtgcaacagagagactaatgtttttgaaacatgtgaa |
200 |
Q |
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| T |
36813263 |
aagactaagagctagcttgttcatgaattgacattttgccatttaaaagtctaaacgatcagtgtgcaacaaagagactaatgtttttgaaacatgtgaa |
36813362 |
T |
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| Q |
201 |
tatagtaaggtgcctttcttttcctaatcttaaagctagggccatatattatcgaaatcacttggaatcttaaagctagtgcatgcataattgaagttat |
300 |
Q |
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| T |
36813363 |
tatagtaaggtgcctttcttttcctaatcttaaagctagggccatatattatcgaaatcacttggaatcttaaagctagtgcatgcataattgaagttat |
36813462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 319 - 405
Target Start/End: Original strand, 36813487 - 36813573
Alignment:
| Q |
319 |
accttaaatacaactcaaaacttgtttatcaacacacactcccacctatctcccaccacttttttgtcaacacacactcccacctat |
405 |
Q |
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| T |
36813487 |
accttaaatacaactcaaaacttgtttatcaacacacactcccacctatctcccaccacttttttgtcaacacacactcccacctat |
36813573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 36813544 - 36813593
Alignment:
| Q |
338 |
acttgtttatcaacacacactcccacctatctcccaccacttttttgtca |
387 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36813544 |
acttttttgtcaacacacactcccacctatctcccaccacttctttgtca |
36813593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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