View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_65 (Length: 449)
Name: NF13763_high_65
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 5911058 - 5911487
Alignment:
| Q |
1 |
acaaaatataaactttgggaagnnnnnnntggatttcaagccaaggacaattcagcaaccaactgccaacgtttctacaaggcattaaatgcatgagtaa |
100 |
Q |
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| T |
5911058 |
acaaaatataaattttgggaagaaaaaaatggatttcaagccaaggacaattcaacaaccaactgccaacgtttctacaaggcattaaatgcatgagtaa |
5911157 |
T |
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| Q |
101 |
aattcttctactctagcataactatgcatttagcttgcggtgcagactttgtaaaattcaatttactttggcatagctatgcatttagcttagactttgt |
200 |
Q |
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| T |
5911158 |
aattcttctactctagcataactatgcatttagcttgcggtgcagactttgtaaaattcaatttactttggcatagctatgcatttagcttagactttgt |
5911257 |
T |
|
| Q |
201 |
ttgtttccacgtttctctcccttttctcgtgtccaaaggcaatctcaccgtgccgtgattttataactctagaattcctaacttttttccactcgtacgt |
300 |
Q |
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| T |
5911258 |
ttgtttccacgtttctctcccttttcttgtgtccaaaggcaatctcaccgtgcagtgattttataactctagaattcctaacttttttccactcgtacgt |
5911357 |
T |
|
| Q |
301 |
ttagcaatggtttcaacgtggaaacaaacatatcattagtcttttggccaatcgcaagtcaaaaaagggtttttaatagttagttttctatatttacggc |
400 |
Q |
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| T |
5911358 |
ttagc---ggtttcaacgtggaaacaaacatatcattagtcttttggccaatcgcaagtcaaaaaagggtttttaatagttagttttctatatttacggc |
5911454 |
T |
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| Q |
401 |
acaatgatgacactgtttacgtgtagtagtttc |
433 |
Q |
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| T |
5911455 |
acaatgatgacactgtttacgtgtagtagtttc |
5911487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 33622153 - 33622078
Alignment:
| Q |
253 |
ccgtgattttataactctagaattcctaacttttttccactcgtacgtttagcaatggtttcaacgtggaaacaaa |
328 |
Q |
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| T |
33622153 |
ccgtgatttcataactctagaattcctaacttcttttcggtcgtacgtttggcaattgtttcaatgtggaaacaaa |
33622078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 34858154 - 34858220
Alignment:
| Q |
61 |
aactgccaacgtttctacaaggcattaaatgcatga-gtaaaattcttctactctagcataactatg |
126 |
Q |
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| T |
34858154 |
aactgccaaagtttctacaatgcattaaatgcatgaggtgaaaatcttctactctagtatagctatg |
34858220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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