View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_67 (Length: 444)
Name: NF13763_high_67
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_67 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 34451182 - 34451018
Alignment:
| Q |
282 |
catatgatataaattggcatattcccgcgaatgatttggcatactgatggtccactttcttaaattttat--gatataaattgcccaaattaaccttgga |
379 |
Q |
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| T |
34451182 |
catatgatataaattggcatattcccgcgaatgatttggcatactgatggtccactttcttaaattttatttgatataaattgcccaaattaaccttgga |
34451083 |
T |
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| Q |
380 |
ttcttttgtctaaccacaactctacatttggatttcctttgtcatactcccacaccattactatg |
444 |
Q |
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| T |
34451082 |
ttcttttgtctaaccacaactctacatttggatttcctttgttatactcccacaccattactatg |
34451018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 34451604 - 34451439
Alignment:
| Q |
35 |
tactcatttattatcattcaataataattctatggatttttcctttgtatcaagctctcaagcttatttcttctatgagatgaatcttcaactctttgat |
134 |
Q |
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| T |
34451604 |
tactcatttattatcattcaataataattctatggatttttcctttgtatcaagct--------tatttcttctatgagatgaatcttcaactctttgat |
34451513 |
T |
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| Q |
135 |
catgtgaattgtaacnnnnnnncaaactattcaagttaaaatgagtgaagagaaagatagaggaatataggtatg |
209 |
Q |
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| T |
34451512 |
catgtgaattgtaac-aaaaaacaaactattcaagttaaaatgagtgaagagaaagatagaggaatataggtatg |
34451439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 23691854 - 23691926
Alignment:
| Q |
68 |
ggatttttcctttgtatcaagctctcaagcttatttcttctatgagatgaatcttcaactctttgatcatgtg |
140 |
Q |
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| T |
23691854 |
ggattttttctttgtatcaagctctcaagcttacttcttatatgagatgaatctttgcctatttgatcatgtg |
23691926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 25219278 - 25219349
Alignment:
| Q |
70 |
atttttcctttgtatcaagctctcaagcttatttcttctatgagatgaatcttcaactctttgatcatgtga |
141 |
Q |
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| T |
25219278 |
attttttctttttatcaagctctcaaacttatttcaaatatgagatgaatattcatctctttgatcatgtga |
25219349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 26808842 - 26808776
Alignment:
| Q |
74 |
ttcctttgtatcaagctctcaagcttatttcttctatgagatgaatcttcaactctttgatcatgtg |
140 |
Q |
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| T |
26808842 |
ttcctttctatcaagctctcaagtttatttctcatatgagatgaattttcatatcttagatcatgtg |
26808776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 43036920 - 43036976
Alignment:
| Q |
85 |
caagctctcaagcttatttcttctatgagatgaatcttcaactctttgatcatgtga |
141 |
Q |
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| T |
43036920 |
caagctctcaatcttatttttcctacgagatgaatcttcatctctttgatcgtgtga |
43036976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 4501046 - 4500991
Alignment:
| Q |
86 |
aagctctcaagcttatttcttctatgagatgaatcttcaactctttgatcatgtga |
141 |
Q |
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| T |
4501046 |
aagctctcaaacttatttctcttatgagatgaatccttatctctttgatcatgtga |
4500991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 8476074 - 8476131
Alignment:
| Q |
47 |
atcattcaataat-aattctatggatttttcctttgtatcaagctctcaagcttattt |
103 |
Q |
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| T |
8476074 |
atcattcaattatgaattctaaggatttttcttttatatcaagctctcaagtttattt |
8476131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 25053257 - 25053212
Alignment:
| Q |
89 |
ctctcaagcttatttcttctatgagatgaatcttcaactctttgat |
134 |
Q |
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| T |
25053257 |
ctctcaagcttatttctcttataagatgaatcttcatctctttgat |
25053212 |
T |
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