View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_7 (Length: 802)
Name: NF13763_high_7
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 197 - 499
Target Start/End: Complemental strand, 45342796 - 45342493
Alignment:
| Q |
197 |
ggtaatttacaagctctgtgtattgtctggtgtgaccattgtctgggatataaacggaaaaacaacaaccaaatagtataccatgccattgtttacctca |
296 |
Q |
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| T |
45342796 |
ggtaatttacaagctctgtgtattgtctggtgtgaccattgtctgggatataaacggaaaaacaacaaccaaatagtataccatgccattgtt-acctca |
45342698 |
T |
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| Q |
297 |
ttaatgcattttcaactttatttcacgttccagtttttt--gtcacattctctgccatttttgttccttcaacttcttctttttacctattcgccgctcc |
394 |
Q |
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| T |
45342697 |
ttaatgcattttcaactttatttcacgttccagttttttttgtcacattctctgccatttttgttccttcaacttcttctttttacctattcgccgctcc |
45342598 |
T |
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| Q |
395 |
tattttctctttcttgttcccttcatttcaataatagaactgcatagagaaatcaatatttgatagagatttgtcactaaaacaagtttgacaatcaacg |
494 |
Q |
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| T |
45342597 |
tattttctctttcttgttcccttcatttcaataatagaactgcatagagaaatcaatatttgatagagatttgtcactaaaacaagtttgacaatcaact |
45342498 |
T |
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| Q |
495 |
cttca |
499 |
Q |
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||||| |
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| T |
45342497 |
cttca |
45342493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 716 - 802
Target Start/End: Complemental strand, 45342272 - 45342187
Alignment:
| Q |
716 |
tactctaagaaaccttcacatggaaccgcaacgtgttatcgtccttttcaccgtcatcaccttcttcttactctcttctctcggtct |
802 |
Q |
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| T |
45342272 |
tactctaagaa-ccttcacatggaaccgcaacgtgttgtcgtcattgtcaccgtcatcaccttcttcttactctcttctctcggtct |
45342187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 45342984 - 45342920
Alignment:
| Q |
19 |
attctgacaatgcatacgtatagcaaaggtgggtggtagggaaatcagaagcgtcgtctcagggt |
83 |
Q |
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| T |
45342984 |
attctgacaatgcatacgtatagcaaaggtgggtggtagggaaatcagaagcgtcgtctcagggt |
45342920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 45342415 - 45342337
Alignment:
| Q |
576 |
acaaaatcgacggttattctttgttttcattttcac---tatcacatgatgtgatatgtgatatatatattatgacaca |
651 |
Q |
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| T |
45342415 |
acaaaatcgacggttattctttgttttcattttcactaatatcacatgatgtgatgtgtgatatatatattatgacaca |
45342337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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