View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_71 (Length: 433)
Name: NF13763_high_71
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_71 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 48997355 - 48997759
Alignment:
| Q |
18 |
atgtgtggttgtgcgcacgtactacgaggaaaacacaattgtcaattgattcttttttgccactaactgtttatctttccattcaaacaaatctaattta |
117 |
Q |
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| T |
48997355 |
atgtgtggttgtgcgcacgtactacgaggaaaacacaattgtcaattgattctttttttccactaactgttcatctttccattcaaacaaatctaattta |
48997454 |
T |
|
| Q |
118 |
ccatatagatctgtgacctgttaatagaaaactaaatccagtaaactagatcatctggcattaaataaataattaatgggtaattaatgcagtacttacc |
217 |
Q |
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| T |
48997455 |
ccatatagatctgtgacctgttaatagaaaactaaatccagtaaactagatcatgtggcattaaataaataattaatgggtaattaatgcagtacttacc |
48997554 |
T |
|
| Q |
218 |
taacataattaaaggatttaacatcccacaacctcattgcaaatgattaaaaaattacatctactctgctaatctgaagattcattaaaaccacaacaca |
317 |
Q |
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| T |
48997555 |
taacataattaaaggatttaacatcccacaacctcattgcaaatgattaaaaaattacatctactctgctaatctgaagattcattaaaa-cacaacaca |
48997653 |
T |
|
| Q |
318 |
tggaatcagcaaacagaaattggcaatgtgtagtccttgttctgtttaaatgaaagatgataatgaccaacaccctttgcaacgttaagatttcccaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48997654 |
tggaatcagcaaacagaaattggcaatgtgtagtccttgttctgtttaaatgaaagatgataatgaccaacaccctttgcaacgttaagatttcccaatt |
48997753 |
T |
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| Q |
418 |
gttcat |
423 |
Q |
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|||||| |
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| T |
48997754 |
gttcat |
48997759 |
T |
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