View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_72 (Length: 431)
Name: NF13763_high_72
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_72 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 151 - 276
Target Start/End: Original strand, 15671359 - 15671484
Alignment:
| Q |
151 |
ggttccataataaataataattgttacatttaagtcttgttaatcaagttggtccattttcgctattttgatcttaatgtctaaagtggaccaacattgt |
250 |
Q |
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| T |
15671359 |
ggttccataataaataataattgttacatttaagtcttgttagtcaagttggtccattttcgctattttgatcttaatgtctaaagtggaccaacattgt |
15671458 |
T |
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| Q |
251 |
agatgattaatcaaatacttcattag |
276 |
Q |
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| T |
15671459 |
agatgtttcatcaaatacttcattag |
15671484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 316 - 420
Target Start/End: Original strand, 15671523 - 15671627
Alignment:
| Q |
316 |
gttgaaaagacaattattagatcatgcatgtccactaaattcaatagtgtatcatcaacactaagatattttttgtttacctttcttcatcttcttccgt |
415 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
15671523 |
gttgaaaagacaattattagatgatgcatgtccactaaattcaatagtgtatcatcaacactaagatattttttgtttatctttcttcatcttcttccct |
15671622 |
T |
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| Q |
416 |
cctat |
420 |
Q |
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||||| |
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| T |
15671623 |
cctat |
15671627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 15670908 - 15670953
Alignment:
| Q |
17 |
atgtacaaataaagtacattaattggggctggttgttccctttcta |
62 |
Q |
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| T |
15670908 |
atgtacaaataaagtacaataattggggctggtttttccctttcta |
15670953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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