View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_79 (Length: 412)
Name: NF13763_high_79
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 50485347 - 50484951
Alignment:
| Q |
1 |
tgtatatccatgacaatgcagctatagcagctacaccacaaccaccagagaacataaagccaccagcaatgagtgataggactatagcagctggaactag |
100 |
Q |
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| T |
50485347 |
tgtatatccatgacaatgcagctatagcagctacaccacaaccaccagagaacataaagccaccagcaatgagtgataggactatagcagctggaactag |
50485248 |
T |
|
| Q |
101 |
gataggactgaagataacaagtagaggggttgcaatgattaatcctatgacagtaccaacaaggattagtccagacaagaacaacagtgtcacaccaata |
200 |
Q |
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| T |
50485247 |
gataggactgaagataacaagtagaggggttgcaatgattaatcctatgacagtaccaacaaggattagtccagacaagaacaacagtgtcacaccaata |
50485148 |
T |
|
| Q |
201 |
gttgcagctgttatgaacttcactgtttggcgtgagggttggttgttgttgttgatgttggtgtcatagggtgatcctccgtaggatcctccatatgatg |
300 |
Q |
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| T |
50485147 |
gttgcagctgttatgaacttcactgtttggcgtgagggttggttgttgttgttgatgttggtgtcatagggtgatcctccgtaggatcctccatatgatg |
50485048 |
T |
|
| Q |
301 |
agtaggatcctgttcttccttgatcagtcattgtggcaagacaaattcacaagnnnnnnnnnttatgattgaggattgagtttttagtgttgagagt |
397 |
Q |
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| T |
50485047 |
agtaggatcctgttcttccttgatcagtcatggtggcaagacaaattcacaagaaaaaaaaattatgattgaggattgagtttttagtgttgagagt |
50484951 |
T |
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