View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_82 (Length: 409)
Name: NF13763_high_82
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_82 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 25 - 399
Target Start/End: Complemental strand, 33052256 - 33051882
Alignment:
| Q |
25 |
gattgggaaataatgaacctgattttaatttggaattagtaaccctcaataagagttttagagaaaatgaagactcttatttataatgaacaagaacatg |
124 |
Q |
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| T |
33052256 |
gattgggaaataatgaacctgattttaatttggaattagtaaccctcaataagagttttagagaaaatgaagactcttatttataatgaacaagaacatg |
33052157 |
T |
|
| Q |
125 |
tttttgtaaacactgtatgtggtgcattttcattcaacaatcatctatttttcggtgaacaattaacaaccatctttattcttagtatttatgaattaaa |
224 |
Q |
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| T |
33052156 |
tttttgtaaacactgtatgtggtgcattttcattcaacaatcatctatttttgggtgaacatttaacaaccatctttattcttagtatttatgaattgaa |
33052057 |
T |
|
| Q |
225 |
ttgtttgttttaggtacatttttgctctggtgtatttattctaaacatctctcaccctttgctgttgtaactcagacactcaagttcaaagtgaaacaca |
324 |
Q |
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| T |
33052056 |
ttgtttgttttaggtacatttttgctctggtgtatttattctaaacatctctcaccctttgatgttgtaactcagacacataagttcaaagtgaaacaca |
33051957 |
T |
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| Q |
325 |
tcaacattgggttgaatgccttcattcaagtttagagacttaaaaacaaaggatgaatttgttatttgatctgtg |
399 |
Q |
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| T |
33051956 |
tcaacattgggttgaatgccttcattcaagtttagagacttcaaaacaaaggatgaatttgttatttgatatgtg |
33051882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 28 - 399
Target Start/End: Original strand, 3652967 - 3653355
Alignment:
| Q |
28 |
tgggaaataatgaacctgattttaatttggaattagtaaccctcaataagagttttagagaaaatgaagactcttatttataatgaacaagaac------ |
121 |
Q |
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| T |
3652967 |
tgggaaataatgaacctgattttaatttggaatcagtaaccctcaataagagttttagagaaaatgaagactcttatttataatgaacaagaacatgttt |
3653066 |
T |
|
| Q |
122 |
--------atgtttttgtaaacactgtatgtggtgcattttcattcaacaatcatctatttttcggtgaacaattaacaaccatctttattcttagtatt |
213 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
3653067 |
ttgtgaacatgtttttgtaaacattgtatgtggtgcattttcattcaacaatcgtctatttttgggtgaacatttaacaaccatctttattcttagtatt |
3653166 |
T |
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| Q |
214 |
tatgaattaaattgtttgttttaggtacatttttgctctggtgtatttattctaaacatctctcaccctttgctg---ttgtaactcagacactcaagtt |
310 |
Q |
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| T |
3653167 |
tatagattgaattgtttgttttagatacatttttgctctggtgtatttattctaaacatctctcaccctttgatgttattgtaactgaggcactcaagct |
3653266 |
T |
|
| Q |
311 |
caaagtgaaacacatcaacattgggttgaatgccttcattcaagtttagagacttaaaaacaaaggatgaatttgttatttgatctgtg |
399 |
Q |
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| T |
3653267 |
caaagtaaaacacatcaacattgggttgaatgccttcattcaagtttagagacttaaaaacaaaggatgaatttgttatttgatctgtg |
3653355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 32279581 - 32279724
Alignment:
| Q |
223 |
aattgtttgttttaggtacatttttgctctggtgtatttattctaaacatctctcaccctttgctgttgtaactcagacactcaagttcaaagtgaaaca |
322 |
Q |
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||||||||| |||||||||| ||||||| |||| ||||||||||||||||| ||| ||||||| ||| |||| | || ||| ||||||| |||||| ||| |
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| T |
32279581 |
aattgtttgctttaggtacacttttgctttggtttatttattctaaacatccctctccctttgatgtcgtaattgaggcacccaagttc-aagtgagaca |
32279679 |
T |
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| Q |
323 |
catcaacattgggttgaatgccttcat-tcaagtttagagactta |
366 |
Q |
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| T |
32279680 |
catcaacattgggttgaatgccttcatgtcaagtttagagactta |
32279724 |
T |
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