View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_84 (Length: 408)
Name: NF13763_high_84
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_84 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 4309774 - 4310088
Alignment:
| Q |
8 |
atgaacttctgcaaatggaaccaaatgaaattatttttgaatatttaaatcaaatcacactggaataaaaaccaaatggagattagtggtgaaatcatga |
107 |
Q |
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| T |
4309774 |
atgaacttttgcaaatggaaccaaatgaaaatatttttgaatatttaaatcaaatcacactggaataaaaaccaaatggagattagtggtgaaatcatga |
4309873 |
T |
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| Q |
108 |
gtgatgaaacaatcatgaacaaggtgatgtgaaatctatcctcaaagtttgattgcattgttgtggcaattgaagaatgaaatgacctgatagttatgaa |
207 |
Q |
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| T |
4309874 |
gtgatgaaacaatcatgaataaggtgatgtgaaatctatcctcaaagtttgattgcattgttgtggcaattgaagaatgaaatgacctgatagttatgaa |
4309973 |
T |
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| Q |
208 |
agttgaagaatcataattttctttgaaaattcatgaacaacatctcttgtagagaaataaagaacatttcgtcgagcaaacctttcaagcttacacctct |
307 |
Q |
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| T |
4309974 |
agttgaagaatcataatcttctttgaaaattcatgaacaacatctcttgtagagaaataaagaacatttcgtcgagcaaacctttcaagcttacacctct |
4310073 |
T |
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| Q |
308 |
aagaagggtgtgaac |
322 |
Q |
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| T |
4310074 |
aagaagggtgtgaac |
4310088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 51727759 - 51727884
Alignment:
| Q |
93 |
gtggtgaaatcatgagtgatgaaacaatcatgaacaaggtgatgtgaaatctatcctcaaagtttgattgcattgttgtggcaattgaagaatgaaatga |
192 |
Q |
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| T |
51727759 |
gtggtgaagtcatgaatgatcaaacaatcgagaacaaggtgacgagaactctctcctcaaagtttgagtacattggagaggtaattgaaggatcaaagga |
51727858 |
T |
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| Q |
193 |
cctgatagttatgaaagttgaagaat |
218 |
Q |
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| T |
51727859 |
cttgacagatatgaaggttgaagaat |
51727884 |
T |
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