View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_87 (Length: 398)
Name: NF13763_high_87
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 29134438 - 29134122
Alignment:
| Q |
13 |
aatatcagttataacggatggagatttagctgtgaagaatgcagtacatggagtatttcctaatgcccgtcatatgttatgtgcatggcatttgctacac |
112 |
Q |
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| T |
29134438 |
aatatcagttataacggatggagatttagccgtgaagaatgcaatacatagagtatttcctaatgcccgtcatatgttatgtgcatggcatttgctacac |
29134339 |
T |
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| Q |
113 |
aatgcaattagcattgttgggattcctgatttaatgtcgtatttgaagaagtgcatgttgaatgacattgaagttagtcaatttgaagaaacatggaatg |
212 |
Q |
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| T |
29134338 |
aatgcaattagcattgttgggattcctgatttaatgtcgtatttgaagaagtgcatgttggatgacattgaagttagtcaatttgaagaaacatggaatg |
29134239 |
T |
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| Q |
213 |
aaatggttacgaagtttggattggaggaaaacaattggataaatgaactgtatgacaaaagatagttatgggctgttactctgacacgaaggaacttttt |
312 |
Q |
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| T |
29134238 |
aaatggttacgaagtttggattggaggaaaacaattggataaatgaactgtatgacaaaagatagttatgggctacaactctgacatgaaggaacttttt |
29134139 |
T |
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| Q |
313 |
tgcaaggataaggacca |
329 |
Q |
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| T |
29134138 |
tgcaaggataaggacca |
29134122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 29134026 - 29133972
Alignment:
| Q |
328 |
caacagttccaaatgtgctttacttatttttgtttgtgaagtggaaactggtttt |
382 |
Q |
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| T |
29134026 |
caacagttccaaatgtgctttacttatttttgtttgtgaagtggaaactgatttt |
29133972 |
T |
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