View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_high_9 (Length: 766)

Name: NF13763_high_9
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_high_9
NF13763_high_9
[»] chr5 (1 HSPs)
chr5 (1-757)||(18544100-18544857)


Alignment Details
Target: chr5 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 1 - 757
Target Start/End: Original strand, 18544100 - 18544857
Alignment:
Q  1 tgccgcaaacacatatttttggaggcgatatcggatcaactatccattcctattcggcatcagacctggaactgaattggatcatagagaagtattcctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18544100 tgccgcaaacacatatttttggaggcgatatcggatcaactatccattcctattcggcatcagacctggaactgaattggatcatagagaagtgttcctt 18544199  T
Q  101 ctcacaacaggtcatgcagtggttgcagtactatgtttcttgataaatttgcagctggagatgaaccaaccgaatagaagctataagacagccgctgaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18544200 ctcacaacaggtcatgcagtggttgcagtactatgtttcttgataaatttgcagctggagatgaaccaaccgaatagaagctataagacagccgctgaac 18544299  T
Q  201 ttgttcctctgagcttaattgttgtaagattcgtaatttggaatataacttcttaggaaactctttcatacatatatattttcaaaaatacaattacttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18544300 ttgttcctctgagcttaattgttgtaagattcgtaatttggaatataacttcttaggaaactctttcatacatatatattttcaaaaatacaattacttc 18544399  T
Q  301 atcgttagttttcactcctcaccacaatggtcaaggtcattttaaattaattcactgattatgaatctcaaccgtcaaatttcaaatcgatggccgatat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  18544400 atcgttagttttcactcctcaccacaatggtcaaggtcattttaaattaattcactgattatgaatctcaaccgtcaaatttcaaatcgaaggtcgatat 18544499  T
Q  401 tcattatagcgtgtaacttttaccgcaagtaatcaaggtctcagtttgtaatggactcgacttacctaacatatcaattctgtt-catatgcagcttgtt 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  18544500 tcattatagcgtgtaacttttaccgcaagtaatcaaggtctcagtttgtaacagactcgacttacctaacatatcaattctgttccatatgcagcttgtt 18544599  T
Q  500 attttgatcaccttttgcccattcaacatcatataccggtcaagtcgtttcttctttatccggagtttattccgctgcatatgtgctccatttttcacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18544600 attttgatcaccttttgcccattcaacatcatataccggtcaagtcgtttcttctttatccggagtttattccgctgcatatgtgctccatttttcacgg 18544699  T
Q  600 tattttaacaactaggaaattaaaatttgaatgacacggttaaacacaaatatacttaatctagacacacctaattattaatgacttttctttgcaggtt 699  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18544700 tattttaacaactaggaaattaaaatttgaatgacacggttaaatacaaatatacttaatctagacacacctaattaataatgacttttctttgcaggtt 18544799  T
Q  700 acacttatggatttcttcttggctgatcagcttaccagtcaggtgtttctgtgctcct 757  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18544800 acacttatggatttcttcttggctgatcagcttaccagtcaggtgtttctgtgctcct 18544857  T

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