View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_high_90 (Length: 392)
Name: NF13763_high_90
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_90 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 29871611 - 29871272
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29871611 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
29871512 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
29871511 |
aaacttgaggattgcaacaagattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactggaattatcttatatggataatctgaaatact |
29871412 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||| ||| || |||||||||||||||||| |||||||| |
|
|
| T |
29871411 |
tggatgatgatgaatctcaggatggtatggaggtgaggattttcccatctctggaggaactcgtattatataagttaccaaacatagagggtttattgaa |
29871312 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttg |
340 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29871311 |
agttgaaagaggggagatgtttccttgtctttctagtttg |
29871272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 30435247 - 30434872
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30435247 |
gcttcaacctcactcaaatctcaagtgcttggatataaattgctatgacggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
30435148 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || ||| ||| | |||| ||||||||||||||| |
|
|
| T |
30435147 |
aaacttggggattgcaacaaaattgtgcggcttccgttatttggtaaactaccatctctaaaaaaacttagagtatatggtatgaataatctgaaatact |
30435048 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30435047 |
tggatgatgatgaatctgaggatggtatggaggtgagggctttcccatctttggaggtactcgaattacatgggttaccaaacatagaggggttattgaa |
30434948 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||||| |
|
|
| T |
30434947 |
agtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgt |
30434872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 30677846 - 30678180
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30677846 |
gcttaaacctcactcaaatctcaaatgcttgacaataaattactatgaaagattatcgttaccaagttggataattattcttagtaatttaatttctctt |
30677945 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
30677946 |
gaacttgaggaatgcaacaaaattgtgcggcttccgttacgtggtaaactaccatctctaaaaagactgagattatctcgtatgaataatctgaaatact |
30678045 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
30678046 |
tggatgatgatgaatctgaggatggtatgaaggtgagggttttcccatctctggagaaactcttattagattctctaccaaacatagaggggttattgaa |
30678145 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttcta |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30678146 |
agtggaaagaggggagatgtttccttgtctttcta |
30678180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 30749068 - 30748693
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30749068 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
30748969 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| | |||| ||||||||||||||| |
|
|
| T |
30748968 |
gaacttgagatttgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactaagattatatggtatgaataatctgaaatact |
30748869 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||| ||||||| |||| |||| ||||| | |||||||||||||||| |||||||| |
|
|
| T |
30748868 |
tggatgatgatgaatctgagtatggtatggaggtgagcgttttcccatctctagaggaactcaacttaaaatccctaccaaacatagagggattattgaa |
30748769 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
30748768 |
agtggaaagaggggagatgtttccttgtctttctaagttggatatctgggattgccctgaacttggactgccatgt |
30748693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 30714112 - 30714487
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30714112 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcattaccaagttggataattattcttagtaatttagtttctctt |
30714211 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
| |||| | ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||| ||||||||||||||| |
|
|
| T |
30714212 |
gtacttctccattgcaagaaaattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactgagattatatggtatcaataatctgaaatact |
30714311 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||| | | ||| |||||||| |||||||||||| |
|
|
| T |
30714312 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttcccctctctggagatactcgaattatcttgtctacgaaacatagtggggttattgaa |
30714411 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatc-attgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
30714412 |
agtggaaagaggggagatgtttccttctctttctaaattggtaatcgattg-ttgccctaaacttggactgccatgt |
30714487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 30339203 - 30339578
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30339203 |
gcttcaacctcactcaaatctcaattccttgacagtaaatttctatgaaggattatcgttaccaagttggataagccttcttagtaatttaatttctctt |
30339302 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
| ||| | | |||||||||||||||| ||||| ||||||||||||||||||||||| || ||| ||| | |||| ||||||||||||||| |
|
|
| T |
30339303 |
aatctttggaattgcaacaaaattgtgctgcttcagttacttggtaaactaccatctctaaaaaatcttagagtatatcgtatgaataatctgaaatact |
30339402 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
30339403 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtactctacttacaacgcctaccaaacatagaggggttattgaa |
30339502 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
30339503 |
agtggaaagaggggagatgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgt |
30339578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 30243050 - 30243425
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| || |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30243050 |
gcttcaacctcactcaaatctcaagtgcttgaaaataagtttctatgagggattatccttaccaagttggataattcttcttagtaatttaatttctctt |
30243149 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||| | ||||||||||||||||||| |
|
|
| T |
30243150 |
gaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatatctaaaaaaactggaattattcgaaatggataatctgaaatact |
30243249 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | ||| | | ||||||||||||||||||||||||| |
|
|
| T |
30243250 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctagaggtactccaattatcttgtctaccaaacatagaggggttattgaa |
30243349 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||||| |
|
|
| T |
30243350 |
agtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgt |
30243425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 30399490 - 30399115
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30399490 |
gcttcaacctcactcaaatctcaagtgcttgaaaataaattactatgacggattatcattaccaagttggataattattcttagtaatttagtttctctt |
30399391 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
||||||| | | ||||| ||| ||||||| |||| ||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
30399390 |
gaacttgggaattgcaagaaagttgtgcgacttcagttaattggtaaactaccgtctctaaaaaaactggaattatctgatatggataatctgaaatact |
30399291 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||| | |||| | ||||||||||||||||||||||||| |
|
|
| T |
30399290 |
tggatgatgatgaatctcaggatggtgtggaggtgagggttttcccatctctggaggaactccatttactatgcctaccaaacatagaggggttattgaa |
30399191 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||||||| |
|
|
| T |
30399190 |
agtggaaagaggggagatgtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgt |
30399115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 376
Target Start/End: Complemental strand, 30059781 - 30059407
Alignment:
| Q |
2 |
cttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctcttg |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || |||||| |||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30059781 |
cttcaacctcactcaaatctcaactgcttgaaaataagtttctatgagggattatccttgccaagttggataattattcttagtaatttagtttctctta |
30059682 |
T |
|
| Q |
102 |
aacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatactt |
201 |
Q |
| |
|
||||| || || || ||| |||||||||||| |||||||||| |||||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
30059681 |
aacttaagcgttgtaagaaagttgtgcggcttcagttacttggtatactaccatctttaaaaaacctggaattatcttatatggataatctgaaatactt |
30059582 |
T |
|
| Q |
202 |
ggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| || |||||||||||||||||| ||||||||| |
|
|
| T |
30059581 |
ggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggaactcgtattatatcagttaccaaacatagagggtttattgaaa |
30059482 |
T |
|
| Q |
302 |
gtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| ||| |||| ||||||||||||||||||| |
|
|
| T |
30059481 |
gtggaaagaggggagatgtttccttgtctttctaagttggatatctctgaatgccgtaaacttggactgccatgt |
30059407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 30482829 - 30482456
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30482829 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattacaatgaagggttatcgttaccaagttggataagccttcttagtaatttaatttctctt |
30482730 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
30482729 |
gaacttcggaattgcaacaaaattgtgcggcttccgttacttggtaaactaccatctctaaaaaaactggaattatcttatatggataatctgaaatact |
30482630 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||| ||||||| ||||||| || ||| | |||| ||| ||||||||||||||||||||| |
|
|
| T |
30482629 |
tggatgatgatgaatctcaggatggtgtggaggtgatggttttccgatctctgatggatctccatttacgatacctacgaaacatagaggggttattgaa |
30482530 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttc-tactttgacaatcattgattgccctaaacttggactgccat |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || |||| |||||| ||||||||||||||||| |
|
|
| T |
30482529 |
agtggaaagaggggagatgtttccttgtctttcttacttgga-aatctcatattgccataaacttggactgccat |
30482456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 29852724 - 29852349
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29852724 |
gcttcaacctcactcaaatctcaagtgcttggacataaattactatgaaggattatcgttaccaagttggataagccttcttagtagtttaatttctctt |
29852625 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
|||||| | | ||||||||||||||||||||||| |||||| |||||||||||| ||| || ||||| | ||||||||||||||||||| |
|
|
| T |
29852624 |
gaacttcggaattgcaacaaaattgtgcggcttccgttactttgtaaactaccatatctaaaaaagttggtattattcaaaatggataatctgaaatact |
29852525 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
29852524 |
tagatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggagatacttctattacaacgcctacgaaacatagaggggttattgaa |
29852425 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
29852424 |
agtggaaagagggaagatatttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatgt |
29852349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 81 - 376
Target Start/End: Complemental strand, 4381003 - 4380708
Alignment:
| Q |
81 |
ttagtaatttaatttctcttgaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatctta |
180 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||||||| ||||||||||||| | ||||||||||||| ||||||| || ||||| | |
|
|
| T |
4381003 |
ttagtaatttaatttctcttaaactttgtgtttgcaacaaagttgtgcggcttccgtcacttggtaaactaacatctctaaaaaaattggaattatttcg |
4380904 |
T |
|
| Q |
181 |
tatggataatctgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttacca |
280 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| || | ||||| |
|
|
| T |
4380903 |
tacggataatctgaaatacttggatgatgatgaatttgaggatggtatggaggtgagggttttcccatctctggaggtactcgaattatattgtctacca |
4380804 |
T |
|
| Q |
281 |
aacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
4380803 |
aacataaaggggttattgaaagtggaaagaggggagttgtttccttgtctttctaacttggatatctagaattgccctaaacttggactgccatgt |
4380708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 17418847 - 17418937
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaattta |
91 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| ||||||||| ||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
17418847 |
gcttcaacctcactcaaatctcaagtgcttgaaaataacttactatgatggaatattgttaccaagttggataagtattcttagtaattta |
17418937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 376
Target Start/End: Complemental strand, 30205747 - 30205560
Alignment:
| Q |
192 |
tgaaatacttggatgatgatgaa---tctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacataga |
288 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||| | || |||| ||||| ||||||||||||||||| ||| | |||||||| |||| |
|
|
| T |
30205747 |
tgaaatacttggatgatgatgaagaatctcaagatggtattgtggcgaggattttcccatctctggaggtactcatattagaaatcctaccaaacttaga |
30205648 |
T |
|
| Q |
289 |
ggggttattgaaagtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
30205647 |
agggttattgaaagtggaaagaggtgagatgtttccttgtctttctcgtttaaccatctccttttgccctaaacttggactgccatgt |
30205560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 29709864 - 29709927
Alignment:
| Q |
278 |
ccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctactttga |
341 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||| |||| |||||||||||| ||||| ||||| |
|
|
| T |
29709864 |
ccaaacttagaggggttagtgaatgtggaaagagaggaggtgtttccttgtccttctattttga |
29709927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 332
Target Start/End: Complemental strand, 30203372 - 30203244
Alignment:
| Q |
205 |
tgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaaa--- |
301 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||||| ||| | |||||||| ||| ||| ||||||||| |||||||||| |||||| |
|
|
| T |
30203372 |
tgatgatgaatctcacaatggtatggaggtgaggattttcccatatttggaggta------ttaaatgatttaccaaacttagaggggttgttgaaactt |
30203279 |
T |
|
| Q |
302 |
----gtggaaagaggggagatgtttccttgtcttt |
332 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |
|
|
| T |
30203278 |
gaaagtggaaagagaggagatgtttccttgtcttt |
30203244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 17419018 - 17419059
Alignment:
| Q |
172 |
attatcttatatggataatctgaaatacttggatgatgatga |
213 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
17419018 |
attatcttacatgaaaaatctgaaatacttggatgatgatga |
17419059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 29709670 - 29709766
Alignment:
| Q |
64 |
aagttggataattattcttagtaatttaattt-ctcttgaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctct |
159 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||| ||||||||||| | || ||||| || |||||| ||||| | | |||||||||||| |||||| |
|
|
| T |
29709670 |
aagttgaataagtattcttagtaatttagtttgctcttgaacttaaagattgcaagaattgtgtgcgccttccttcatttggtaaactactatctct |
29709766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 26706757 - 26706382
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| ||||| || |||||||| |||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
26706757 |
gcttcaacctcactcaaatctcaagtgcttggaaataaagtactacgacggattatcattaccaagttgggtaagtattcttagtaatttagtttctctt |
26706658 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
||||||| ||| ||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||| |
|
|
| T |
26706657 |
gaacttggggattgcaagaaatttgtgcggcttccgttacttggtaaactaccatctctagaaaaactggaattatcttctatggttaatctgaaatact |
26706558 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
26706557 |
tggatgatgatgaatctcaggatggcatggaggtgagggttttcccatctctgaaggtactccacttatatgagttaccaaacatagaggggttattgaa |
26706458 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| ||||||||| |||||||||| || |||||||||||| |
|
|
| T |
26706457 |
agtggaaagaggaaaggtgtttccttgtctttctcgtttgacaatatactattgccctaagctaggactgccatgt |
26706382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 20297281 - 20297656
Alignment:
| Q |
1 |
gcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataattattcttagtaatttaatttctctt |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
20297281 |
gcttcaacctcagtcaaatctcaagtgcttggaaataaattgctatgatggattgtggttaccaagttggataattattcttagtaatttagtttctttt |
20297380 |
T |
|
| Q |
101 |
gaacttgaggactgcaacaaaattgtgcggcttccattacttggtaaactaccatctctnnnnnnnctgagattatcttatatggataatctgaaatact |
200 |
Q |
| |
|
||||||||| | |||||| ||||||||| |||||| ||| ||||||||||||||||||| |||| | ||||| |||| ||||||||||||||| |
|
|
| T |
20297381 |
gaacttgagaattgcaacgaaattgtgcagcttccgttaattggtaaactaccatctctaaaaaaactgacaatatctggtatgtataatctgaaatact |
20297480 |
T |
|
| Q |
201 |
tggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggggttattgaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| | | ||| ||||||||||||||||||||| |
|
|
| T |
20297481 |
tggatgatgatgaatctcgggatggtagggaggtgagggttttcccatctctggaggtactcgacttattttgtctacaaaacatagaggggttattgaa |
20297580 |
T |
|
| Q |
301 |
agtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttggactgccatgt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||| |||||||| |
|
|
| T |
20297581 |
agtggaaagaggggagatgtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgt |
20297656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 192 - 365
Target Start/End: Original strand, 7582597 - 7582770
Alignment:
| Q |
192 |
tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggg |
291 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| |||| ||||| ||||| ||||||| |||||||| | ||| ||||||||| ||||||| |
|
|
| T |
7582597 |
tgaaatacttggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggg |
7582696 |
T |
|
| Q |
292 |
gttattgaaagtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttg |
365 |
Q |
| |
|
||| ||||||||||||| | ||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
7582697 |
gttgttgaaagtggaaaaaaaggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttg |
7582770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 365
Target Start/End: Complemental strand, 7098649 - 7098476
Alignment:
| Q |
192 |
tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttctcatctctggaggtactcgacttacatgggttaccaaacatagaggg |
291 |
Q |
| |
|
||||||||||||||||| |||||| | | ||||||||||||| ||| ||||| ||||||| ||| |||| |||| ||| | |||||| ||||||| |
|
|
| T |
7098649 |
tgaaatacttggatgataatgaatttcacaatggtatggaggtaaggattttcccatctctagagacactcttgttacgcgggatgccaaacttagaggg |
7098550 |
T |
|
| Q |
292 |
gttattgaaagtggaaagaggggagatgtttccttgtctttctactttgacaatcattgattgccctaaacttg |
365 |
Q |
| |
|
| |||||||||||||||| |||| ||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
7098549 |
actgttgaaagtggaaagagatgagacgtttccttgtctttctattttggaaatcgacaattgccctaaacttg |
7098476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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