View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_94 (Length: 389)
Name: NF13763_high_94
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_94 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 11070676 - 11070412
Alignment:
| Q |
12 |
ataaactattcctaacccgaagaaaaaatgactagaatatcgtttttaacttttaaagctgatattggataataattattattagtacatgtcgaaagaa |
111 |
Q |
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| T |
11070676 |
ataaactattcctaacccgaagaaaaaatgactagcatatcgttttgaacttttaaagctgatattggataataattattattattacatgtcgaaagaa |
11070577 |
T |
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| Q |
112 |
tttcattatttataaagaatttaaaacaatcttgataattcaaataaacttaactaaaagattagttcaagtacaccaatggagatacgtaacacaatct |
211 |
Q |
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| T |
11070576 |
tttcattatttataaagaatttaaaacaatcttcataattcaaataaacttcactaaaagattagttcaagtacaccaatggagatacgtaacacagtct |
11070477 |
T |
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| Q |
212 |
gttggaatactatag--taaattggaagttgaaagaataaacatcaagtttcacatttgatagaa |
274 |
Q |
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| T |
11070476 |
gttggaatactatagtctaaattgaaagttgaaagaataaacatcaagtttcacattagatagaa |
11070412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 11070223 - 11070155
Alignment:
| Q |
270 |
tagaattagtgttctgtgtactgaaagaagtagaggccccacattgcatgtatagacatattaattgtg |
338 |
Q |
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| T |
11070223 |
tagaattagtgttctgagcaccgaaagaagtagaggccccacattgtatgtatagacatattaattgtg |
11070155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 11042017 - 11042117
Alignment:
| Q |
97 |
tacatgtcgaaagaatttcattatttataaagaatttaaaacaatcttgataattcaaataaacttaactaaaagattagttcaagtacaccaatggaga |
196 |
Q |
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| T |
11042017 |
tacatgtccaaacaacttcattattta--aaggatttaaaacaaacttcataattcaaataaactagactaaaagattagatgaattacaccaatggaga |
11042114 |
T |
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| Q |
197 |
tac |
199 |
Q |
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| T |
11042115 |
tac |
11042117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 11040119 - 11040185
Alignment:
| Q |
132 |
ttaaaacaatcttgataattcaaataaacttaactaaaagattagttcaagtacaccaatggagata |
198 |
Q |
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| T |
11040119 |
ttaaaacaaacttcagaattcaagtaaacttgattaaaagattagttcaagtacaccaaaggagata |
11040185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 11060431 - 11060380
Alignment:
| Q |
148 |
aattcaaataaacttaactaaaagattagttcaagtacaccaatggagatac |
199 |
Q |
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| T |
11060431 |
aattcaaataaacttgattaaatgattagttcaagtacaccaaaggagatac |
11060380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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