View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_1 (Length: 975)
Name: NF13763_low_1
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 815; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 12 - 957
Target Start/End: Complemental strand, 6146795 - 6145848
Alignment:
| Q |
12 |
attattctcacatgtgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttggctccaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6146795 |
attattctcacatgtgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttgactccaa |
6146696 |
T |
|
| Q |
112 |
tgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatgg |
211 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6146695 |
tgttgcaagttattgttgcagcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataatgg |
6146596 |
T |
|
| Q |
212 |
aagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttaaattactattattcaaattgaaaagnnnnnnnn-tatgtaggaaaa |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
6146595 |
aagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttagattactattattcaaattgaaaaaaaaaatatatatgtaggaaaa |
6146496 |
T |
|
| Q |
311 |
gacgagtctt-acaatcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgttttcacggtagtcccatttcttttgatca |
409 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6146495 |
gacgagtctttacaatcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgttttcacggtagtcccatttgttttgatca |
6146396 |
T |
|
| Q |
410 |
agttccattccaaaatgtagtgaggatctcatcttaaatgaaatgcaataacttggtaaacaagtaatcataaattatttgatggtacatttctttttca |
509 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6146395 |
agttccattctaaaatgtagtgaggatctcatcttaaatgaaatgcaataacttggtaaacaagtaatcataaattatttgatggtacatttctttttca |
6146296 |
T |
|
| Q |
510 |
gattttttgacaaggcagcaatagttgaaagtgaaggaaatttagcaaaggaacaaagtccatggaaactagcaacagtcactagagttgaagaaatgaa |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6146295 |
gattttttgacaaggcagcaatagttgaaagtgaaggaaatttagcaaaggaacaaagtccatggaaactagcaacagtcactagagttgaagaaatgaa |
6146196 |
T |
|
| Q |
610 |
gcttatgatcaacatgatcccaatttggatatttactttaccatttggaatgtgtgctgcacaaacatcaactttctttatcaagcaaggtaatataatg |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6146195 |
gcttatgatcaacatgatcccaatttggatatttactttaccatttggaatgtgtgctgcacaaacatcaactttctttatcaagcaaggtaatataatg |
6146096 |
T |
|
| Q |
710 |
aatagaaaaataggacatggttttgagattccaccagcttcaattttcactatttccgctattggtatgataatttctgtcgcaatctacgacaaaatcc |
809 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6146095 |
aatagaaaaataggacatggtttcgagattccacccgcttcaattttcactatttccgctattggtatgataatttctgtcgcaatttacgacaaaatcc |
6145996 |
T |
|
| Q |
810 |
tcgtaccggttttaagaaaaataagcggcaatgaaagagggatgaacattcttcaaaggatcggtgctggaatggttttttcagttttaacaatgatagt |
909 |
Q |
| |
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|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
6145995 |
tcgtgccagttttaagaaaaataagtggcaatgaaagagggatgaacattcttcaaaggattggtattggaatggttttttcggttttaacaatgatagt |
6145896 |
T |
|
| Q |
910 |
agcagctttggtagagnnnnnnnggcttaaagttgttgatatgaatcc |
957 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| |||||||| |
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|
| T |
6145895 |
agcagctttggtcgagaaaaaaaggcttaaagttgttgagatgaatcc |
6145848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 504 - 918
Target Start/End: Complemental strand, 23693106 - 23692692
Alignment:
| Q |
504 |
ttttcagattttttgacaaggcagcaatagttgaaagtgaaggaaatttagcaaaggaacaaagtccatggaaactagcaacagtcactagagttgaaga |
603 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||| || ||||||| | | || | |||||||||||||| ||| |||| || |||| ||||||||| |
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|
| T |
23693106 |
ttttcagatttcttgacaaggcagctataattgaaaacgatggaaattcaatagagaagcaaagtccatggaagctaacaactgtaactacagttgaaga |
23693007 |
T |
|
| Q |
604 |
aatgaagcttatgatcaacatgatcccaatttggatatttactttaccatttggaatgtgtgctgcacaaacatcaactttctttatcaagcaaggtaat |
703 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||| |||| ||| ||||||||||||| ||| |||||||||||||| ||||| ||||| ||| || | |
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|
| T |
23693006 |
aatgaagcttataatcaatatgataccaatttgggtattcactataccatttggaataagtgtagcacaaacatcaacattcttcatcaaacaaagtgct |
23692907 |
T |
|
| Q |
704 |
ataatgaatagaaaaataggacatggttttgagattccaccagcttcaattttcactatttccgctattggtatgataatttctgtcgcaatctacgaca |
803 |
Q |
| |
|
|||||||||||||| ||||| | | ||||| |||||||||||||||||||||| || | || | || |||||||||||||| || || || |||| |
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|
| T |
23692906 |
ataatgaatagaaagataggtgaaaggtttgaacttccaccagcttcaattttcacagttgctgccttaggaatgataatttctgtggccatttatgaca |
23692807 |
T |
|
| Q |
804 |
aaatcctcgtaccggttttaagaaaaataagcggcaatgaaagagggatgaacattcttcaaaggatcggtgctggaatggttttttcagttttaacaat |
903 |
Q |
| |
|
| || || ||||| | ||||||||||||| ||||||||||| || ||||| ||||||||||| ||| ||||||| |||| | || | ||||| |
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| T |
23692806 |
agattctagtacctatgttaagaaaaataaatcaaaatgaaagaggaattaacatccttcaaaggattggttttggaatgtttttcactattattacaat |
23692707 |
T |
|
| Q |
904 |
gatagtagcagcttt |
918 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
23692706 |
gatagtggcagcttt |
23692692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 23693855 - 23693730
Alignment:
| Q |
69 |
ttttatcgttataggataccaaatggaagccctttggctccaatgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatc |
168 |
Q |
| |
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||||||||||||||| |||||| ||| || |||||| ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||| |
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|
| T |
23693855 |
ttttatcgttatagggtaccaagtgggagtcctttgactccaatgttgcaagttcttgttgctgccttttctaaaaggaagcttccttatccttctaatc |
23693756 |
T |
|
| Q |
169 |
caactcaattgtatgaagtttctaag |
194 |
Q |
| |
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| |||||||||||| ||||||||| |
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|
| T |
23693755 |
ctgatcaattgtatgaggtttctaag |
23693730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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