View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_100 (Length: 379)
Name: NF13763_low_100
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 3342985 - 3343332
Alignment:
| Q |
19 |
ttatttgacttaaat---gtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttaca |
115 |
Q |
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| T |
3342985 |
ttatttgacttaaattatgtatccaagccggactttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttaca |
3343084 |
T |
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| Q |
116 |
tgaagatttgctacaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcct |
215 |
Q |
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| T |
3343085 |
ttaagatttgctacaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcct |
3343184 |
T |
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| Q |
216 |
ccaccaattctgtattagagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaa |
315 |
Q |
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| T |
3343185 |
ccaccaattctgtattggagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaa |
3343284 |
T |
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| Q |
316 |
atcacataatccatcagttagaacaagttcaagaaactctttcttctt |
363 |
Q |
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| T |
3343285 |
atcacataatccatcagttagaacaagttcaagaaactctttcttctt |
3343332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 22 - 363
Target Start/End: Original strand, 3367479 - 3367820
Alignment:
| Q |
22 |
tttgacttaaatgtatccaagccgggctttgggtgtcacgaacctcattccggtgaaatttatcctactattatgtttgaatgggaaatttacatgaaga |
121 |
Q |
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| T |
3367479 |
tttgatttaaatgaatccaagcccaactttaggtgtcatgaacctcattctggtgaaacctatcttactattatgtttgaatgggaagttattatggatt |
3367578 |
T |
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| Q |
122 |
tttgctacaatatgtttcttctttgggaatgcttgagatgaaagacacttcgtagttctattcaaaggaagatatattgctttgtttatatcctccacca |
221 |
Q |
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| T |
3367579 |
attgatatagtatgtttcttctttgggaatgtttgaggtgaaaaacactttgtagttctacccaaaggaagatatattgctttgtttatatcttcaacca |
3367678 |
T |
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| Q |
222 |
attctgtattagagtcaaatctgtttttggagttgaaaaacatctgaaaaactttcaagcatgacagatgaagttgtttgctaggcttaggcaaatcaca |
321 |
Q |
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| T |
3367679 |
aatctgtattagaatcaaatctatttttggagttgtaaaacatctcaaaaactttcaagcatgcgagatgaagttgtttgctaggtttaggtaaatcaca |
3367778 |
T |
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| Q |
322 |
taatccatcagttagaacaagttcaagaaactctttcttctt |
363 |
Q |
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| T |
3367779 |
caatccatcaattagaacaagttcaaggagctctttcttctt |
3367820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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