View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_101 (Length: 375)
Name: NF13763_low_101
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_101 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 49520426 - 49520784
Alignment:
| Q |
1 |
cactatgtattcatcatccactacaggaacaaaataaagcaaacaatcaatgttagtctctatgcacaattcgatgctcaaaaatgtaaattatgccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520426 |
cactatgtattcatcatccactacaggaacaaaataaagcaaacaatcaatgttagtctctatgcacaattcgatgctcaaaaatgtaaattatgccaaa |
49520525 |
T |
|
| Q |
101 |
tatatattataggattatttggcatcttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520526 |
tatatattataggattatttagcatcttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtc |
49520625 |
T |
|
| Q |
201 |
aggcgctggttcctctggaggagtgtactctccatctttcttactctcccttttaccaagacaataaaatgtcaaataatcacgagggtgtgcttcaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520626 |
aggcgctggttcctctggaggagtgtactctccatctttcttactctcccttttaccaagacaataaaatgtcaaataatcacgagggtgtgcttcaatg |
49520725 |
T |
|
| Q |
301 |
ttcttcttttttatggcatcagcaatctcagtatacatcatctccatggtccttctttg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520726 |
ttcttcttttttatggcatcagcaatctcagtatacatcatctccatggtccttctttg |
49520784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 49509405 - 49509482
Alignment:
| Q |
126 |
cttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcagg |
203 |
Q |
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| T |
49509405 |
cttacctatcatcattttggcatgaacatatatcatgaatcttctagaattttgtgctctactataatcactgtcagg |
49509482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 49509594 - 49509638
Alignment:
| Q |
315 |
ggcatcagcaatctcagtatacatcatctccatggtccttctttg |
359 |
Q |
| |
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||| |||||||| |||| ||||||||||||||| ||||||||||| |
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| T |
49509594 |
ggcttcagcaatgtcagaatacatcatctccatagtccttctttg |
49509638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 44663162 - 44663124
Alignment:
| Q |
126 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
164 |
Q |
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| T |
44663162 |
cttacctatcatcatcttggcatgaacatagatcatgaa |
44663124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 2415896 - 2415934
Alignment:
| Q |
126 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
164 |
Q |
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|||||||||||||||||||| ||||||||| |||||||| |
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| T |
2415896 |
cttacctatcatcatcttggtatgaacatatatcatgaa |
2415934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 5401783 - 5401739
Alignment:
| Q |
127 |
ttacctatcatcatcttggaatgaacatagatcatgaatcttcta |
171 |
Q |
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||||||||||| | ||||||||||||||| | ||||||||||||| |
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| T |
5401783 |
ttacctatcatgagcttggaatgaacataaaccatgaatcttcta |
5401739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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