View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_103 (Length: 367)
Name: NF13763_low_103
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 1975575 - 1975909
Alignment:
| Q |
14 |
aggatcgagagaagtgagtttctcctctgcatggatgattttgatgtctcctctgcatattgttgcttcagttccgtcaaacagtgcttcctcatgcatg |
113 |
Q |
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| T |
1975575 |
aggatcaagagaagtgagtttctcctctgcatggatgattttgatgtctcctctgcatattgttgcttcagttccgtcaaacagtgcttcctcatgcatg |
1975674 |
T |
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| Q |
114 |
gggctttgatagtcaatgcaaggtttggtatagtggcatgcttttggaatttgaagtaacaatcgtaatttaaaaatctgaatcagttaattaagtgtgt |
213 |
Q |
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| T |
1975675 |
gggctttgatagtcaatgcaaggtttggtatagtggcatgcttttggaatttgaagtaacaatcgtaatttaaaagtctgaatcagttaattaagtgtgt |
1975774 |
T |
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| Q |
214 |
tccacatgttttattttgatagtcaatgcaaggttggtagtatgtatgcttgtgaaatttgaagtaattattcgtaatttagaagtgtgaatctattaat |
313 |
Q |
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| T |
1975775 |
tccacatgttttattttgatagtcaatgcaaggttggtagtaggtatgcttgtgaaatttgaagtaattattcgtaatttagaagtgtgaatctattaat |
1975874 |
T |
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| Q |
314 |
taaagtcatgtaggattaagacgctttttgcacaa |
348 |
Q |
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| T |
1975875 |
taaagtcatgtaggattaagacgctttttgcacaa |
1975909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 118 - 283
Target Start/End: Complemental strand, 1954891 - 1954724
Alignment:
| Q |
118 |
tttgatagtcaatgcaaggtttggtatagtggcatgcttttggaatttgaagtaacaatcgtaatttaaaaatctgaatcagttaattaagtgtgttcca |
217 |
Q |
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| T |
1954891 |
tttgatagtcaatgcatggtttggtatagtggtattcttttggaatttgaagtaacaatcgtaatttaaaattctgaatcagttaattaagtgtgttctt |
1954792 |
T |
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| Q |
218 |
catgttttattttgatagtcaatgcaaggttggtagta--tgtatgcttgtgaaatttgaagtaatta |
283 |
Q |
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| T |
1954791 |
catgttttattttgatagtcaatgcaaagtttgtagtacgtatattcttatgaaatttgaagtaatta |
1954724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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