View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_106 (Length: 365)
Name: NF13763_low_106
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_106 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 39579756 - 39579576
Alignment:
| Q |
16 |
atatgaaagatttt-gagtcaaaaaagaaatgaagaacgattgctttttgacctaaatttaactacaataaaacaaaataaaagtctaaatatgctaaac |
114 |
Q |
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| T |
39579756 |
atatgaaagatttttgagtcaaaaaagaaatgaagaacgattgctttttgacctaaatttaactacaataaaacaaaataaaagtctaaatatgctaaac |
39579657 |
T |
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| Q |
115 |
ttttgaagaaacatggctcaaataacaataacaagtcattaattaaccagtattaaatttacaatgtatgtatatctgttt |
195 |
Q |
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| T |
39579656 |
ttttgaagaaacatggttcaaataacaataacaagtcattaattaaccagtattaaatttacaatgtatgtatatctgttt |
39579576 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 39579508 - 39579422
Alignment:
| Q |
263 |
gatgaatcttacatacatgctaaaaacttt-aactacatctagaagatgtgaacatcctatttatatacacatctgatcttatatgt |
348 |
Q |
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| T |
39579508 |
gatgaatcttacatacatgctaaaaacttttaactacatctagaagatgtgaacatcctatttatatatacatatgatcttatatgt |
39579422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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