View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_11 (Length: 759)
Name: NF13763_low_11
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 10 - 744
Target Start/End: Original strand, 48410824 - 48411571
Alignment:
| Q |
10 |
taatactataacaacttaaatattcaatacttccccagaaaccgcacctgaaagttgaaatccatcttccggtctgattgtcatgataaacggaaatttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48410824 |
taatactataacaacttaaatattcaatacttccccagaaaccgcacctgaaagttgaaatccatcttccggtctgattgtcatgataaacggaaatttt |
48410923 |
T |
|
| Q |
110 |
atcctctaagttaacaccaccgtatataccaatagtattgtccaggctataattaacaaaatccatcaa-------------attcacagttaacaaaaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
48410924 |
atcctctaagttaacaccaccgtatataccaatagtattgtccaggctacaattaacaaaatccatcaactcaatccatcaaattcacagttaacaaaaa |
48411023 |
T |
|
| Q |
197 |
cccggctcaaaataattacgaatcacnnnnnnnnttggaatctagttaacatgccgactacagttatcaaaacaataagtaataggccatacaagtaagc |
296 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48411024 |
cccggctcaaaataattacgaatcacaaaaaaaaaaggaatctagttaacatgccgactacagttatcaaaacaataagtaataggccatacaagtaagc |
48411123 |
T |
|
| Q |
297 |
atattcacatggaatctagtgatattaaaaatggaacaaaggcctcataccttgtagtggcaaggctgcatccagaaggcgaaaaataggccgattgcac |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48411124 |
atattcacatggaatctagtgatattaaaaatggaacaaaggcctcataccttgtagtggcaaggctgcatccagaaggcgaaaaataggccgattgcac |
48411223 |
T |
|
| Q |
397 |
agaccttttgtgagtaaatgtcctcaaggatgtgtgcttaggacccccaatagatctcaaatcccaggtacatgcagttccatcagaggaactggtagct |
496 |
Q |
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| T |
48411224 |
agaccttttgtgagtaaatgtcctcaaggatgtgtgcttaggacccccaatagatctcaaatcccaggtacatgcagttccatcagaggaactggtagct |
48411323 |
T |
|
| Q |
497 |
acaatatgagtggtttgcgggctgaaatctattgtattaatcctactttcatgcaaatcccattgggacgaacattttcctatcctgttatcccaaacag |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48411324 |
acaatatgagtggtttgcgggctgaaatctattgtattaatcctactttcatgcaaatcccattgggacgaacattttcctatcctgttatcccaaacag |
48411423 |
T |
|
| Q |
597 |
acagacccccagaaccctcggcaaaatataaacagttcacctcattctttggctgtgagagggcatatatactgttttcaccgttgtataccatatcaaa |
696 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48411424 |
acagacccccagaaccctcggcaaaatataaacagttcacctcattctttggctgtgagagggcatatatactgttttcaccgttgtataccatatcaaa |
48411523 |
T |
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| Q |
697 |
tatttccttctcagcatccatgaatcgaataagtccattgtaacaact |
744 |
Q |
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| T |
48411524 |
tatttccttctcagcatccatcaatcgaataagtccatcgtaacaact |
48411571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 443 - 668
Target Start/End: Original strand, 48417907 - 48418138
Alignment:
| Q |
443 |
ccaatagatctcaaatcccaggtacatgcagttccatcagaggaactggtagctacaatatgagtggtttgcgggctgaaatctattgtattaatcctac |
542 |
Q |
| |
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|||||| |||| ||||| ||||||||||||||||||||||| ||||||||| | |||| |||| | ||| ||| |||||||||||||||||||||| |
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| T |
48417907 |
ccaatacatctgaaatctcaggtacatgcagttccatcagatgaactggtaacaccaatgtgagggttttcagggttgaaatctattgtattaatcctca |
48418006 |
T |
|
| Q |
543 |
tttcatgcaaatcccattgggacgaa------cattttcctatcctgttatcccaaacagacagacccccagaaccctcggcaaaatataaacagttcac |
636 |
Q |
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|| ||||||||| | |||||||| |||||||||||||| ||||||||||||| || | ||||||||||| || |||||||||||||| | |
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| T |
48418007 |
attgatgcaaatctaagcgggacgaagacgaacattttcctatcctattatcccaaacagtcaaatatccagaaccctcagctaaatataaacagtttgc |
48418106 |
T |
|
| Q |
637 |
ctcattctttggctgtgagagggcatatatac |
668 |
Q |
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||||||||| ||||||||||| |||||||||| |
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| T |
48418107 |
ctcattcttgggctgtgagagagcatatatac |
48418138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 618 - 744
Target Start/End: Original strand, 28396883 - 28397008
Alignment:
| Q |
618 |
caaaatataaacagttcacctcattctttggctgtgagagggcatatatactgttttcaccgttgtataccatatcaaatatttccttctcagcatccat |
717 |
Q |
| |
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|||||||||||||||| | |||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28396883 |
caaaatataaacagtttgcttcattctttgcctgtgagagg-catatattttgttttcaccgttgtataccatatcaaatatttccttctcagcatccat |
28396981 |
T |
|
| Q |
718 |
gaatcgaataagtccattgtaacaact |
744 |
Q |
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|||| ||||||||||| ||||||||| |
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| T |
28396982 |
caatctaataagtccatcgtaacaact |
28397008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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