View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_110 (Length: 362)
Name: NF13763_low_110
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_110 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 208 - 349
Target Start/End: Complemental strand, 21546596 - 21546454
Alignment:
| Q |
208 |
attttataatttctaatgaatatttgacagtaaagcattgcacagcaaacccaccttcaatcgctcttatcagctaccaaaaaa-tatctcccattaatt |
306 |
Q |
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| T |
21546596 |
attttataatttctaatgaatatttgacagtaaagcgttgcacatcaaatccacctttaatcgctcctatcagctgccaaaaaaatatctcccattcatt |
21546497 |
T |
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| Q |
307 |
tcccatacattaatttggaagttacacatgattttatgtttat |
349 |
Q |
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| T |
21546496 |
tcccatacattaatttggaagttacacatgattttatgtttat |
21546454 |
T |
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Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 46424140 - 46424267
Alignment:
| Q |
17 |
catccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaacaatagggttcataaacaagtaaataataataacacaaagcacgcaa |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||| |||| |||||||||| || |
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| T |
46424140 |
catccattggatcttatatttaatgaattcatcgcttcatcttaaaagagcaacaacatggtttttaaacaagtaaataacaatagcacaaagcacacac |
46424239 |
T |
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| Q |
117 |
gtgttttccgcccagtaattgcttttaat |
145 |
Q |
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| T |
46424240 |
atgatttccggccagtaatt-cttttaat |
46424267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 9452953 - 9453031
Alignment:
| Q |
17 |
catccattggatcttatatttaatgaattcaccgcttcatcttaaaagagcaacaatagggttcataaacaagtaaata |
95 |
Q |
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| T |
9452953 |
catccattagatcttatatttaatgaatttaccgcttcatcttaaaagagcaacaatagggttcataaacaagtaaata |
9453031 |
T |
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