View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_112 (Length: 352)
Name: NF13763_low_112
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 19953144 - 19953470
Alignment:
| Q |
4 |
ttttccggatttcatctcacgactaattaaatgcagcttttgtttctcaactcttaaaacggttggacaaaatcagaatacaactccaatatataatcac |
103 |
Q |
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| T |
19953144 |
ttttccagatttcatctctcaactaatttaatgtagctttcatttcacaactcttaaa-cggttggacaaaatcagaatacaactccaatatataatcac |
19953242 |
T |
|
| Q |
104 |
tatgtatatggtagctttcattggtatttggtagtgaagtaattagtagtagtatgtgaataaatgcgaaggggcttctgaatttgacgctaatatgttg |
203 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| | |
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| T |
19953243 |
tatgtatatggtagctttcattggtatttggtagttaagtaatttgtagtagtatgtgaataaatgtgaaggggcttctgaatttgaggctgttatgtag |
19953342 |
T |
|
| Q |
204 |
atcatggcaataatgatgatactgattttgaaatatgaagagtataatatagagtaagcatgtacttgatgctgagaaaaatattgatgctgctgctcct |
303 |
Q |
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| T |
19953343 |
atcatggtgattatgatggtactgattttgaaatacgaagagtataatatagagtaatcatgtacttgatgctgagaaaaatattgatgctgctgctctt |
19953442 |
T |
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| Q |
304 |
tcaaatttcctctaaaacagaacacttt |
331 |
Q |
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| T |
19953443 |
tcaaatttcctccaaaacagaacacttt |
19953470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 3029632 - 3029692
Alignment:
| Q |
58 |
taaaacggttggacaaaatcagaatacaactccaatatataatcactatgtatatggtagc |
118 |
Q |
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| T |
3029632 |
taaaactgttggacgaaatcagaacacaactccaatatatagtcactacgtatatggtagc |
3029692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 22651579 - 22651520
Alignment:
| Q |
59 |
aaaacggttggacaaaatcagaatacaactccaatatataatcactatgtatatggtagc |
118 |
Q |
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||||| ||||||| ||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
22651579 |
aaaactgttggacgaaatcagaatacaactctaatatatagtcactacgtatatggtagc |
22651520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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