View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_114 (Length: 347)

Name: NF13763_low_114
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_114
NF13763_low_114
[»] chr7 (2 HSPs)
chr7 (24-338)||(4647063-4647379)
chr7 (205-339)||(17245446-17245580)
[»] scaffold0252 (1 HSPs)
scaffold0252 (119-335)||(4846-5062)
[»] chr2 (1 HSPs)
chr2 (119-337)||(25101607-25101825)
[»] chr3 (5 HSPs)
chr3 (151-335)||(8562975-8563159)
chr3 (151-337)||(6009013-6009199)
chr3 (188-337)||(17783823-17783976)
chr3 (188-337)||(19085342-19085495)
chr3 (188-337)||(19092450-19092603)
[»] chr8 (2 HSPs)
chr8 (149-337)||(15993397-15993585)
chr8 (151-337)||(14502697-14502883)
[»] chr5 (2 HSPs)
chr5 (151-337)||(22289352-22289538)
chr5 (149-334)||(28243619-28243804)
[»] chr6 (1 HSPs)
chr6 (188-317)||(26904527-26904656)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 338
Target Start/End: Complemental strand, 4647379 - 4647063
Alignment:
Q  24 tattccaaaattaatatcatgcgcggaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaattgttgcaaagaaatg 123  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647379 tattccaaaattgatatcatgcgggaaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaattgttgcaaagaaatg 4647280  T
Q  124 caagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcc--tattg 221  Q
    |||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||  |||||    
T  4647279 caagacacgcggctgcaagctactggtgaggaccaaactcgcatgtttgagctaaggaaacgcttgcaacggctgatgtcctaagacgatgcctatattg 4647180  T
Q  222 gcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacc 321  Q
    || |||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  4647179 gcgtcaacgtgctaaagcacacttgtacaaggatggtgatagaaatacaaagttttttcatgcatcggcaacagctcggaaaaagttaaaccgtataacc 4647080  T
Q  322 tctcttgatgatgatgt 338  Q
    |||||||||||||||||    
T  4647079 tctcttgatgatgatgt 4647063  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 339
Target Start/End: Complemental strand, 17245580 - 17245446
Alignment:
Q  205 caagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaa 304  Q
    ||||| ||||| |||||||  ||| |||| ||  |||| ||||||||||||||||||||||| || || |||||||||||||| || | |||| | ||||    
T  17245580 caagatgatgcttattggcggcaacgtgcaaagactcattggtacaaggatggcgatagaaacaccaaattttttcatgcatctgctacagctcgtaaaa 17245481  T
Q  305 aggtaaaccgtataacctctcttgatgatgatgtc 339  Q
    ||||||| || || |  |||||||| |||||||||    
T  17245480 aggtaaatcgcattatttctcttgacgatgatgtc 17245446  T

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Target: scaffold0252 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 119 - 335
Target Start/End: Original strand, 4846 - 5062
Alignment:
Q  119 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 218  Q
    ||||||||||||||||| |||| ||| || | ||||| |||| | | ||| |||| ||| ||||||   |||||||  || |||||||||||||||||||    
T  4846 aaatgcaagacacacggatgcatgcttctggggaggatcaaaatcgtatgcttgaacttcggaaacgtatgcaacgcttgttgtcccaagacgatgccta 4945  T
Q  219 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 318  Q
    ||||| |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  4946 ttggcgtcaacgtgctaaaactcactggtacaaggatggtgatagaaatacgaagttttttcatgcctcggcaacagcctggaaaaaggtaaatcgtata 5045  T
Q  319 acctctcttgatgatga 335  Q
    || ||||||||||||||    
T  5046 acatctcttgatgatga 5062  T

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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 119 - 337
Target Start/End: Original strand, 25101607 - 25101825
Alignment:
Q  119 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 218  Q
    |||||||||||| ||| ||| | ||| || | ||||||||||   ||||| |||| |||||||||  | ||||| |  |  |||||||||||||||||||    
T  25101607 aaatgcaagacaaacgactgtatgcttctggggaggaccaaaaccgcatgcttgaccttaggaaatgcatgcaaagcttaatgtcccaagacgatgccta 25101706  T
Q  219 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 318  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| |||  |||||||||||||| |||||    
T  25101707 ttggcgtcaacgtgctaaagctcactggtataaggatggcgacagaaatacaaagttttttcatgcctcgacaacagcccggaaaaaggtaaactgtata 25101806  T
Q  319 acctctcttgatgatgatg 337  Q
    ||||| ||| |||||||||    
T  25101807 acctcccttcatgatgatg 25101825  T

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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 335
Target Start/End: Original strand, 8562975 - 8563159
Alignment:
Q  151 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 250  Q
    ||||| |||||| ||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||| |||| |||||||| |||||| ||| |    
T  8562975 gaggatcaaactcgcatggttgagcttcggaaacgtatgcaacgattgctatcccaagacgatgcctattggcgtcaacgtgctaaaactcactagtata 8563074  T
Q  251 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatga 335  Q
    ||||||| || ||||||||||||||||||||||| ||||||| | || |||| |||||||| || |||| ||||||||| |||||    
T  8563075 aggatggtgacagaaatacaaagttttttcatgcctcggcaacaactcggaagaaggtaaatcgcataaactctcttgacgatga 8563159  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 337
Target Start/End: Complemental strand, 6009199 - 6009013
Alignment:
Q  151 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 250  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  6009199 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 6009100  T
Q  251 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 337  Q
    || |||| ||  | ||||| ||||||||||| || |||||||  ||| | || |||||||| |||||||| ||||||||||||||||    
T  6009099 agtatggtgaccgtaataccaagttttttcacgcttcggcaacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 6009013  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 337
Target Start/End: Original strand, 17783823 - 17783976
Alignment:
Q  188 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 283  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  17783823 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 17783922  T
Q  284 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 337  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  17783923 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 17783976  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 337
Target Start/End: Original strand, 19085342 - 19085495
Alignment:
Q  188 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 283  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19085342 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19085441  T
Q  284 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 337  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19085442 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19085495  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 337
Target Start/End: Original strand, 19092450 - 19092603
Alignment:
Q  188 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 283  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19092450 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19092549  T
Q  284 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 337  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19092550 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19092603  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 149 - 337
Target Start/End: Complemental strand, 15993585 - 15993397
Alignment:
Q  149 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 248  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || |||||    
T  15993585 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggta 15993486  T
Q  249 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 337  Q
     |||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  15993485 taaggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 15993397  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 337
Target Start/End: Original strand, 14502697 - 14502883
Alignment:
Q  151 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 250  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  14502697 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 14502796  T
Q  251 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 337  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  14502797 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 14502883  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 337
Target Start/End: Original strand, 22289352 - 22289538
Alignment:
Q  151 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 250  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  22289352 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 22289451  T
Q  251 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 337  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  22289452 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 22289538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 334
Target Start/End: Original strand, 28243619 - 28243804
Alignment:
Q  149 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 248  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||| ||||||||| | ||||| ||||||| ||||  ||| ||| |||| |||||    
T  28243619 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctactgtcccaatatgatgcttattggcttcaacatgcaaaaactcattggta 28243718  T
Q  249 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatg 334  Q
     ||||||||  |  | ||||| ||||||||||| || ||||| | |||||| || |||||||| | ||||||||||||||||||||    
T  28243719 taaggatggtaaccgtaataccaagttttttcacgcttcggctacagcttgaaagaaggtaaatcttataacctctcttgatgatg 28243804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 26904527 - 26904656
Alignment:
Q  188 tgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatc 287  Q
    ||||||||||  |||||||||| |||||||||||||  ||| |||||||  |||| |||||||||||||| ||| |||||||||| || ||||||| |||    
T  26904527 tgcaacggcttttgtcccaagatgatgcctattggcgacaacgtgctaagactcattggtacaaggatggtgatcgaaatacaaaattctttcatgtatc 26904626  T
Q  288 ggcaatagcttggaaaaaggtaaaccgtat 317  Q
     ||   ||||||||| |||||||| |||||    
T  26904627 tgcttcagcttggaagaaggtaaatcgtat 26904656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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