View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_118 (Length: 331)
Name: NF13763_low_118
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_118 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 28 - 324
Target Start/End: Original strand, 4305680 - 4305976
Alignment:
| Q |
28 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtaca |
127 |
Q |
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| T |
4305680 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtgca |
4305779 |
T |
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| Q |
128 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
227 |
Q |
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| T |
4305780 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
4305879 |
T |
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| Q |
228 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
324 |
Q |
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| T |
4305880 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
4305976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 4311172 - 4311333
Alignment:
| Q |
166 |
aattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgttt---tattacagtgtaatgaaggctaatattaagaaggaa |
262 |
Q |
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| T |
4311172 |
aattcatactagaagtatatagcatggtcaatttgcattaaattaattgttaatgttgtttaattattacagtgtaatgaaggctaatattaagaaggag |
4311271 |
T |
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| Q |
263 |
gagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
324 |
Q |
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| T |
4311272 |
gagcctagttgtgcacaaatgacaatcttttatgatgggaaagtaattgtgtttgatgatgt |
4311333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 183 - 322
Target Start/End: Original strand, 4300774 - 4300913
Alignment:
| Q |
183 |
tataacatggtcaatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaat |
282 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |
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| T |
4300774 |
tataacatggtcaatttgcattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctaaatgtacccaaat |
4300873 |
T |
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| Q |
283 |
gacaatcttgtatgatgggaaagtaattgtgtttgatgat |
322 |
Q |
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| T |
4300874 |
gacaattttttatgatgggaaaataattgtgtttgatgat |
4300913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 4311019 - 4311130
Alignment:
| Q |
37 |
atgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtacaaacatgttc |
136 |
Q |
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| T |
4311019 |
atgaatcatcacaatataacacctatgaattttcaacaatttcctcatctcttcctacaagagattcctattttgggaaactccaggtacatacatgttc |
4311118 |
T |
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| Q |
137 |
ttttttctactt |
148 |
Q |
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|||||||||||| |
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| T |
4311119 |
ttttttctactt |
4311130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 4294311 - 4294376
Alignment:
| Q |
257 |
aaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgat |
322 |
Q |
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| T |
4294311 |
aaggaagagcctagatgtgcacaaatgacaattttttatgatgggaaagtaattgtgtttgatgat |
4294376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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