View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_12 (Length: 758)
Name: NF13763_low_12
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13753507 - 13753299
Alignment:
| Q |
1 |
caaattccataatgatttccaatctttattacagaaaaatcataagacgaattttctttgttcccagattttagtgtatcatgttcaaagcatccccctc |
100 |
Q |
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| T |
13753507 |
caaattccataatgatttccaatctttattacagaaaaatcataagacgaattttctttgttcccagattttagtgtatcatgttcaaagcatcccc-tc |
13753409 |
T |
|
| Q |
101 |
ctcaattaacttctgatcatatttactggtctatttgtaccgataatataaagtttgttgaaagactaataacctgttaggtactgcgttgtgtttctca |
200 |
Q |
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| T |
13753408 |
ctcaaataacttctgatcatatttactggtctatttgtactgataatataaagtttgttgaaagactaataacctgttaggtactgcgttgtgtttctca |
13753309 |
T |
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| Q |
201 |
aaaccattgt |
210 |
Q |
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|||||||||| |
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| T |
13753308 |
aaaccattgt |
13753299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 575 - 740
Target Start/End: Complemental strand, 13752847 - 13752682
Alignment:
| Q |
575 |
atatattgtggaaatgtgatatgataaagatggaattcacagctccatatggatcttagatgctgaaaattgatgcagaatacaacaagtactcccaaag |
674 |
Q |
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| T |
13752847 |
atatattgtggaaatgtgatatgataaagatggaattcacagctccatatggatcttagatgctgaaaattgatgcagaacacaacaagtactcccaaag |
13752748 |
T |
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| Q |
675 |
agtaaaagatatattctatggcaatgagttggttctgagatatctccaaggtccagttgctgttcc |
740 |
Q |
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| T |
13752747 |
agtaaaagatatattctatggcaatgagctggttctgagatatctccaaggtccagttgctgttcc |
13752682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 211 - 407
Target Start/End: Complemental strand, 13753218 - 13753017
Alignment:
| Q |
211 |
tataggaaacacagaactaaacaatcactaatctttcaaatttt-----tagtatgagttccttgaagaaatagaaatttccttaacttggaatgtgtgt |
305 |
Q |
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| T |
13753218 |
tataggaaacacataactaaacaatcactaatctttcaaattttggttatagtatgagttccttgaataaatagaaatttccttaacttgaaatgtgtgt |
13753119 |
T |
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| Q |
306 |
gattttacttgatagaaacaagcatcaatttataaattattttgatatatataaatacatcaaggtttacacactcataatgtaataggaagtaacatct |
405 |
Q |
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| T |
13753118 |
gattttacttgatagaaacaagcatcaatttataaattattttgatacatataagtacatcaaagtctacacactcataatgtaatagaaagtaacatct |
13753019 |
T |
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| Q |
406 |
tc |
407 |
Q |
| |
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|| |
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| T |
13753018 |
tc |
13753017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 441 - 580
Target Start/End: Complemental strand, 13753013 - 13752874
Alignment:
| Q |
441 |
aactcagtgtaggatgcagaccataacagtgtaattcgaactgtccaaaacataatattacaaaattataatgaaagtatgcataaaggcctaaaacata |
540 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13753013 |
aactcagagtaggatgcagaccataacagtgtaattggaactgtctaaaacataatattacaaaattataatgaaagtacgcataaaggcctaaaacata |
13752914 |
T |
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| Q |
541 |
cgattgttattaaagaaaagtacattgaaaatagatatat |
580 |
Q |
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|||| |||||||||| |||||||||||||||| |||||| |
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| T |
13752913 |
agattattattaaagagaagtacattgaaaatatatatat |
13752874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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