View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_120 (Length: 329)

Name: NF13763_low_120
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_120
NF13763_low_120
[»] chr5 (6 HSPs)
chr5 (189-320)||(16471991-16472122)
chr5 (192-320)||(16465038-16465166)
chr5 (23-121)||(16471815-16471923)
chr5 (221-292)||(1683922-1683993)
chr5 (224-281)||(24179604-24179661)
chr5 (25-76)||(16464870-16464921)
[»] chr7 (1 HSPs)
chr7 (209-319)||(37205062-37205172)
[»] chr2 (1 HSPs)
chr2 (209-276)||(12261627-12261694)
[»] chr3 (3 HSPs)
chr3 (222-316)||(25052689-25052780)
chr3 (213-320)||(5050149-5050256)
chr3 (209-250)||(36455559-36455600)
[»] chr4 (2 HSPs)
chr4 (192-256)||(52418098-52418159)
chr4 (213-274)||(7848060-7848121)
[»] chr1 (2 HSPs)
chr1 (213-320)||(10253987-10254090)
chr1 (211-252)||(26586316-26586357)
[»] scaffold0007 (1 HSPs)
scaffold0007 (209-255)||(190394-190440)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 189 - 320
Target Start/End: Original strand, 16471991 - 16472122
Alignment:
Q  189 cttacttagaatcctcttaatttctttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcac 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16471991 cttacttagaatcctcttaatttctttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcac 16472090  T
Q  289 cttcgttgactatattttcttcttccttcatc 320  Q
    || ||||||| | | ||| ||||| |||||||    
T  16472091 ctacgttgacgacaattttttctttcttcatc 16472122  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 16465038 - 16465166
Alignment:
Q  192 acttagaatcctcttaatttctttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcacctt 291  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  16465038 acttataatccttttaatttctttttcgatctcactctcaatttagaaacaaatctctcactttcaccaaagatacaagaattcaggtcatactcacctt 16465137  T
Q  292 cgttgactatattttcttcttccttcatc 320  Q
    || |||| | |||||||||||||||||||    
T  16465138 cgctgacgacattttcttcttccttcatc 16465166  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 16471815 - 16471923
Alignment:
Q  23 agtctagaaggcacaacagagtggaatcacgcatagaatattttttgagc----------tagactcgcatagactcctgagtctatgatgagtttacga 112  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||||||          ||||||||||||||||| ||||| |||||||||||||| |    
T  16471815 agtctagaaggcacaactaagtggaatcgcgcatagaatattttttgagctagactcgtgtagactcgcatagactcgtgagtttatgatgagtttacaa 16471914  T
Q  113 gtctatgag 121  Q
    |||||||||    
T  16471915 gtctatgag 16471923  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 1683922 - 1683993
Alignment:
Q  221 tctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcaccttc 292  Q
    ||||||||||| |||||||||| | ||| || |||||||||| ||||||||||||||||| || ||||||||    
T  1683922 tctcactctcagtttagaaacataactcacattctcaccaaatatagaagaattcaggtcgtattcaccttc 1683993  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 24179661 - 24179604
Alignment:
Q  224 cactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtca 281  Q
    |||| |||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||    
T  24179661 cactttcaatttagaaacaaaactctcaccctcaccaaagatagaagaattaaggtca 24179604  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 16464870 - 16464921
Alignment:
Q  25 tctagaaggcacaacagagtggaatcacgcatagaatattttttgagctaga 76  Q
    ||||||||||||||  |||||||||||| |||| ||| ||||||||||||||    
T  16464870 tctagaaggcacaaacgagtggaatcacacatataatcttttttgagctaga 16464921  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 319
Target Start/End: Original strand, 37205062 - 37205172
Alignment:
Q  209 tttctttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcaccttcgttgactatattttct 308  Q
    ||||||||||   |||||||||||||| |||||||| ||||||||||||||||| || |||||||||| ||||  ||||| ||| | ||| | |||||||    
T  37205062 tttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattcaagtcacgctcacattcttcgacgacattttct 37205161  T
Q  309 tcttccttcat 319  Q
     ||||||||||    
T  37205162 ccttccttcat 37205172  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 12261694 - 12261627
Alignment:
Q  209 tttctttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattca 276  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||||||  || |||||||||||||    
T  12261694 tttctttttcgatttcactctcaatttagaaacaaaactctcactctcactcaagatagaagaattca 12261627  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 25052780 - 25052689
Alignment:
Q  222 ctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcaccttcgttgactatattttcttcttcctt 316  Q
    |||||||||||||||||||| |  ||| |||||||| |||| |||||||||||||||| || ||||| || ||||   |||||||||||||||||    
T  25052780 ctcactctcaatttagaaacgatcctcccactctcatcaaagatagaagaattcaggttatgctcacatttgttg---atattttcttcttcctt 25052689  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 320
Target Start/End: Original strand, 5050149 - 5050256
Alignment:
Q  213 tttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcaccttcgttgactatattttcttctt 312  Q
    ||||||| |||||||||||||||| ||| | | ||||||||||||| ||| ||||||||||| |||||| |||||  |||||  ||   |||||||||||    
T  5050149 tttttcgttctcactctcaatttaaaaaaacaactctcactctcactaaagatagaagaattaaggtcacactcatattcgtcaacatcattttcttctt 5050248  T
Q  313 ccttcatc 320  Q
     |||||||    
T  5050249 tcttcatc 5050256  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 36455600 - 36455559
Alignment:
Q  209 tttctttttcggtctcactctcaatttagaaacaaatctctc 250  Q
    ||||||||||| |||||||||||||||||||| ||| |||||    
T  36455600 tttctttttcgatctcactctcaatttagaaataaaactctc 36455559  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 52418159 - 52418098
Alignment:
Q  192 acttagaatcctcttaatttctttttcggtctcactctcaatttagaaacaaatctctcactctc 256  Q
    |||||||||||||||   |||||||||| |||||||||||||||| ||||||| |||||||||||    
T  52418159 acttagaatcctctt---ttctttttcgatctcactctcaatttaaaaacaaaactctcactctc 52418098  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 7848060 - 7848121
Alignment:
Q  213 tttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaatt 274  Q
    ||||||| |||||||||| |||||||||||||  |||||||||||| ||| |||||||||||    
T  7848060 tttttcgatctcactctccatttagaaacaaaattctcactctcacgaaagatagaagaatt 7848121  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 320
Target Start/End: Complemental strand, 10254090 - 10253987
Alignment:
Q  213 tttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtcatactcaccttcgttgactatattttcttctt 312  Q
    ||||||| |||||||||||  | | ||||||| |||||||| | |||||| ||||||||||| ||||||    ||||||||| ||| | |||||||||||    
T  10254090 tttttcgatctcactctcatctaataaacaaaactctcactttgaccaaagatagaagaatttaggtca----caccttcgtcgacgacattttcttctt 10253995  T
Q  313 ccttcatc 320  Q
    ||| ||||    
T  10253994 cctacatc 10253987  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 26586316 - 26586357
Alignment:
Q  211 tctttttcggtctcactctcaatttagaaacaaatctctcac 252  Q
    ||||||| | |||||||||||||||||||||||| |||||||    
T  26586316 tcttttttgctctcactctcaatttagaaacaaaactctcac 26586357  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 190440 - 190394
Alignment:
Q  209 tttctttttcggtctcactctcaatttagaaacaaatctctcactct 255  Q
    ||||||||||| ||||| |||||||||||||||||| || |||||||    
T  190440 tttctttttcgatctcattctcaatttagaaacaaaactttcactct 190394  T

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