View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_122 (Length: 324)

Name: NF13763_low_122
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_122
NF13763_low_122
[»] chr5 (18 HSPs)
chr5 (18-301)||(10217492-10217773)
chr5 (18-182)||(11049400-11049564)
chr5 (35-299)||(10610894-10611159)
chr5 (35-296)||(10747775-10748037)
chr5 (35-277)||(10603958-10604201)
chr5 (33-277)||(10763891-10764136)
chr5 (44-299)||(10741468-10741724)
chr5 (35-189)||(10564322-10564476)
chr5 (18-189)||(10717683-10717854)
chr5 (25-189)||(10601150-10601314)
chr5 (53-253)||(9837106-9837307)
chr5 (33-189)||(7192300-7192456)
chr5 (18-156)||(10660828-10660966)
chr5 (53-252)||(10558151-10558351)
chr5 (41-189)||(10652965-10653113)
chr5 (50-183)||(10550094-10550227)
chr5 (72-189)||(19606662-19606779)
chr5 (53-135)||(10589205-10589287)
[»] chr6 (5 HSPs)
chr6 (53-299)||(12947828-12948075)
chr6 (53-299)||(12906374-12906621)
chr6 (53-299)||(12931463-12931710)
chr6 (53-189)||(12898865-12899001)
chr6 (53-298)||(12957263-12957509)
[»] chr2 (1 HSPs)
chr2 (53-299)||(17924181-17924428)
[»] chr3 (1 HSPs)
chr3 (133-226)||(31468020-31468114)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 10217492 - 10217773
Alignment:
Q  18 agtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaa 117  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10217492 agtgttttaaaccagagatattctgtatgacatttggaattgatccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaa 10217591  T
Q  118 agaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaatatgataggaatatcaccaaacagattat 217  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10217592 agaggatggtattgttccattgaaggagttcccttgcaaatgaaggtattccaagcttacgcattcacca--atgataggaatatcaccaaacagattat 10217689  T
Q  218 tttcagaaacatctagcttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaact 301  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||    
T  10217690 tttcagaaacatctagcttaccaatattttttagcatgccaacttctcttggcaagctaccgctcaaaaaattatgtgacaact 10217773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 11049400 - 11049564
Alignment:
Q  18 agtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaa 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11049400 agtgttttaaaccaaagatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaa 11049499  T
Q  118 agaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcatt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11049500 agaggacggtattgttccattgaaggagttcccttgcaagagaaggtattcgaagcttacgcatt 11049564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 299
Target Start/End: Complemental strand, 10611159 - 10610894
Alignment:
Q  35 atattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttc 134  Q
    |||| ||| |||||||  |||||||||||| | ||||||||| | |||||||||||||||  |||||||||||| |||||||||||||| ||||||||||    
T  10611159 atatcctgcataacatcaggaattgatccagacaattgatttgttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggaaggtattgttc 10611060  T
Q  135 cattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatctag 233  Q
    ||||||||||||| |||||||| ||||||||||| || ||||  |||||||||| | |  |||||| || |  | | || | ||| ||||| ||||||||    
T  10611059 cattgaaggagttaccttgcaaaagaaggtattctaaacttatacattcaccaactgttctaggaagataagaagatagttgattctcagatacatctag 10610960  T
Q  234 cttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 299  Q
    | ||  ||||||||||||||| || | ||||||||| |||||||  |||||| |||| || |||||    
T  10610959 catattaatattttttagcatacccacttctcttggtaagctaccactcaaagagttatgcgacaa 10610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 296
Target Start/End: Original strand, 10747775 - 10748037
Alignment:
Q  35 atattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttc 134  Q
    ||||| || |||||||  |||||||| ||| | ||| ||||||| ||||||||||||| |  |||||||| ||| |||||||||||||| ||||||||||    
T  10747775 atattttgcataacatcaggaattgacccagacaatcgatttcttgaaaggtctaaatgttgaagaccttcgagagaagccaaagaggatggtattgttc 10747874  T
Q  135 cattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatctag 233  Q
    ||||||||||||||||||||| | |||||||||| |||  |  ||| ||||||| | |  |||||||||||||| | |||| ||| ||||| ||||||||    
T  10747875 cattgaaggagttcccttgcaggtgaaggtattctaaggctgtgcaatcaccaattgttgtaggaatatcaccagatagatgattctcagagacatctag 10747974  T
Q  234 cttaccaatattttttagcatgccaagttctcttggcaagctactgctcaaaaagttctgtga 296  Q
    |  | ||||||||||||| |  || | ||||||||| |||||||  ||||||||||| |||||    
T  10747975 ccaatcaatattttttagtaaacccacttctcttggtaagctaccactcaaaaagttatgtga 10748037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 277
Target Start/End: Complemental strand, 10604201 - 10603958
Alignment:
Q  35 atattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttc 134  Q
    |||||||| | |||||  ||||||| |||||| ||||||||||| ||||  |||||||||   ||||||||||| ||||| |||||||| ||||||||||    
T  10604201 atattctgcaaaacatcaggaattggtccatacaattgatttcttgaaatatctaaatattgtagacctttgagagaagcaaaagaggatggtattgttc 10604102  T
Q  135 cattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaata-tgataggaatatcaccaaacagattattttcagaaacatctag 233  Q
    | ||||| ||||||||||||||  |||||||||| ||||||| ||||||||||||| |   |||||| || ||| ||| || ||||||||| |||||||     
T  10604101 cgttgaatgagttcccttgcaaacgaaggtattctaagcttatgcattcaccaatagttccaggaatctccccacacaaatgattttcagagacatctaa 10604002  T
Q  234 cttaccaatattttttagcatgccaagttctcttggcaagctac 277  Q
    |  | |||||||||||||||| || | |||| |||| |||||||    
T  10604001 ccaatcaatattttttagcatacccacttcttttggtaagctac 10603958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 10763891 - 10764136
Alignment:
Q  33 atatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgt 132  Q
    ||||||| || |||||||  |||||||||||| | ||||||||||| ||||||||||||  |  |||||||||||| ||||||| |||||| ||||||||    
T  10763891 atatattttgcataacatcaggaattgatccagacaattgatttcttgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgt 10763990  T
Q  133 tccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatct 231  Q
    |||  |||||||||||||||||||  |||||||||| ||| ||  ||||||||||| | |  |||||||||||||| | |||| ||| ||||| | |||     
T  10763991 tccgctgaaggagttcccttgcaattgaaggtattctaaggttgtgcattcaccaattgttttaggaatatcaccagatagatgattctcagatagatcc 10764090  T
Q  232 agcttaccaatattttttagcatgccaagttctcttggcaagctac 277  Q
    ||| |  |||||||||||| ||| || | ||||||||| |||||||    
T  10764091 agcatgtcaatattttttaacatacccacttctcttggtaagctac 10764136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 299
Target Start/End: Original strand, 10741468 - 10741724
Alignment:
Q  44 ataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaagg 143  Q
    |||||||  |||||||||||| | ||||||||||| ||||||||||||  |  |||||||||||| ||||||| |||||| |||||||||||  ||||||    
T  10741468 ataacatcaggaattgatccagacaattgatttcttgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttccgctgaagg 10741567  T
Q  144 agttcccttgcaagagaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatctagcttaccaat 242  Q
    |||||||||||||  |||||||||| ||| ||  ||||||||||| | |  |||||||||||||| | |||  ||| ||||| | ||||||| |  ||||    
T  10741568 agttcccttgcaattgaaggtattctaaggttgtgcattcaccaattgttctaggaatatcaccagatagacgattctcagatagatctagcatgtcaat 10741667  T
Q  243 attttttagcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 299  Q
    |||||||| ||| || | ||||||||| | |||||  ||||||  ||| ||||||||    
T  10741668 attttttaacatacccacttctcttggtatgctaccactcaaagtgttatgtgacaa 10741724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 10564476 - 10564322
Alignment:
Q  35 atattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttc 134  Q
    ||||| || |||||||  |||||||||||| | ||||||||||| |||||||||||||||  |||||||||||| ||||||| |||||||||||||||||    
T  10564476 atattttgcataacatcaggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccatagaggacggtattgttc 10564377  T
Q  135 cattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaat 189  Q
      ||||||| |||||||||||| | ||| ||||| |||||||  ||||| |||||    
T  10564376 tgttgaaggcgttcccttgcaacataagatattctaagcttatacattcgccaat 10564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 10717683 - 10717854
Alignment:
Q  18 agtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaa 117  Q
    |||||| ||||||| | || ||||| |||||||  ||||||| ||| || ||||||||||| |||||||||||||||   | | | ||||| ||||||||    
T  10717683 agtgttctaaaccatagattttctgcataacatcaggaattggtccgtacaattgatttcttgaaaggtctaaatatcttaaagccttgagagaagccaa 10717782  T
Q  118 agaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaat 189  Q
    |||||| |||||||||||||||| ||||||||||| |||  |||| ||||||||||| | ||||||||||||    
T  10717783 agaggatggtattgttccattgatggagttcccttccaaatgaagatattccaagctcatgcattcaccaat 10717854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 10601314 - 10601150
Alignment:
Q  25 taaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggac 124  Q
    ||||||| |||||||||  ||||||   ||||||| |||||| ||||||||||| ||||  |||||||||   ||||||||||| | ||||||||||||     
T  10601314 taaaccagatatattctccataacaccaggaattggtccatacaattgatttcttgaaatatctaaatattgtagacctttgagagcagccaaagaggat 10601215  T
Q  125 ggtattgttccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaat 189  Q
    ||||||||||| ||||| || ||| |||||||  |||||||||| ||||||||  ||||||||||    
T  10601214 ggtattgttccgttgaaagaattctcttgcaaatgaaggtattctaagcttacatattcaccaat 10601150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 9837106 - 9837307
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaag-gagttccct 151  Q
    |||||||||||| | || ||||||||||| | ||||||||||  |||| ||||||| || ||||||| ||| ||||| |||||  ||||| ||||||||     
T  9837106 ggaattgatccagacaactgatttctagacatgtctaaatattgaagaactttgagagatgccaaagtggaaggtatggttcc-gtgaagagagttcccc 9837204  T
Q  152 tgcaagagaaggtattccaagcttacgcattcaccaa-tatgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatatttttta 250  Q
    || ||| |||||||||| || |||| ||||||||||| | | || ||||| |||||  |||||| ||||||||| ||||||||||||  |||||||||||    
T  9837205 tgtaagtgaaggtattctaaacttatgcattcaccaattgttattggaatgtcacccgacagatgattttcagagacatctagcttatgaatatttttta 9837304  T
Q  251 gca 253  Q
    |||    
T  9837305 gca 9837307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 7192456 - 7192300
Alignment:
Q  33 atatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgt 132  Q
    |||||||||||| |||||| ||||||| |||||| ||  ||||||| || ||||||||||||  ||||| ||| |  |||||||| ||||| ||||| ||    
T  7192456 atatattctgtagaacattaggaattggtccatacaaccgatttcttgacaggtctaaatattgaagacttttaactgaagccaatgaggatggtatggt 7192357  T
Q  133 tccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaat 189  Q
    ||| ||||||||||| |||||||| |  |||||||| |||| || |||||| |||||    
T  7192356 tccgttgaaggagtttccttgcaaaaagaggtattctaagcgtatgcattcgccaat 7192300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 10660828 - 10660966
Alignment:
Q  18 agtgttttaaaccaaatatattctgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaa 117  Q
    ||||||||||| |  |||||||||||| |||||||||||| | |||| | ||| ||||||  || | ||||| ||||  ||||||||| || ||||||||    
T  10660828 agtgttttaaaactgatatattctgtagaacatttggaatcggtccagacaatcgatttcctgacaagtctagatattgaagacctttaagtgaagccaa 10660927  T
Q  118 agaggacggtattgttccattgaaggagttcccttgcaa 156  Q
     ||||| ||||| ||||| ||||| ||||||||||||||    
T  10660928 tgaggatggtatggttccgttgaaagagttcccttgcaa 10660966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 252
Target Start/End: Complemental strand, 10558351 - 10558151
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttccctt 152  Q
    |||||||||||| | ||||||||||| || | ||||||||||  ||||||| | |   ||||||||||||| |||||  ||  || |||||| || ||||    
T  10558351 ggaattgatccagacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtatgatttgatggaaggaatttcctt 10558252  T
Q  153 gcaagagaaggtattccaagcttacgcattcaccaata-tgataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 251  Q
    |||| | ||||||||| ||||||  ||||| | ||||  | |||||||| |||||| ||| |||||| ||||| | ||||||||||  ||||||||||||    
T  10558251 gcaaaaaaaggtattctaagcttttgcattgatcaatggttataggaatttcaccagacaaattattctcagagaaatctagcttattaatattttttag 10558152  T
Q  252 c 252  Q
    |    
T  10558151 c 10558151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 10652965 - 10653113
Alignment:
Q  41 tgtataacatttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattga 140  Q
    |||| |||||||||||||| |||||| ||  ||||||| || | ||||||||||  ||||||||| || |||||||| | ||| || || ||||| ||||    
T  10652965 tgtagaacatttggaattggtccatacaaccgatttcttgacaagtctaaatattgaagacctttaagtgaagccaatgtggatggaatggttccgttga 10653064  T
Q  141 aggagttcccttgcaagagaaggtattccaagcttacgcattcaccaat 189  Q
    | ||||||||||||||   ||||||||| |||  || ||||||||||||    
T  10653065 acgagttcccttgcaaagaaaggtattctaagactatgcattcaccaat 10653113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 10550227 - 10550094
Alignment:
Q  50 tttggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcc 149  Q
    ||||||||||||||  | ||||| ||||| || ||||||||   |  |||||||||||| ||  |||||||||| |||||  |||||||||| || ||||    
T  10550227 tttggaattgatccggataattggtttcttgagaggtctaacactcgaagacctttgagagattccaaagaggatggtatgcttccattgaatgaattcc 10550128  T
Q  150 cttgcaagagaaggtattccaagcttacgcattc 183  Q
    ||  ||| | ||||||||| ||||||| ||||||    
T  10550127 ctgtcaaaataaggtattctaagcttaagcattc 10550094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 19606662 - 19606779
Alignment:
Q  72 gatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttcccttgcaagagaaggtattccaa 171  Q
    ||||||| || ||||||||||||  ||||||| | || ||||| |||||||| |||||  |||| |  |||||||||||||| ||   ||| ||||| ||    
T  19606662 gatttcttgataggtctaaatatcgaagacctctaagagaagctaaagaggatggtatgattccgtgaaaggagttcccttgaaaataaagatattctaa 19606761  T
Q  172 gcttacgcattcaccaat 189  Q
    ||||| ||||||||||||    
T  19606762 gcttatgcattcaccaat 19606779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 10589205 - 10589287
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttcc 135  Q
    |||||||||||| | || |||||||| || | ||||||||||  |||||||||||| || ||||||| | | |||||||||||    
T  10589205 ggaattgatccagacaactgatttcttgacatgtctaaatattgaagacctttgagagatgccaaagtgaaaggtattgttcc 10589287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 299
Target Start/End: Complemental strand, 12948075 - 12947828
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttccctt 152  Q
    |||||||||||| | ||||||||||| |||||||||||||||  ||||||||||||  ||| ||||||||||||||||||||| ||||||||||||| ||    
T  12948075 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttccttt 12947976  T
Q  153 gcaagagaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatcta--gcttaccaatatttttt 249  Q
    ||||  |||  ||||| ||||||   ||||||||||| |   |||||||||||||| | |||| ||| ||||| |||||||  ||||  |||||||||||    
T  12947975 gcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatgattctcagagacatctaatgctt--caatatttttt 12947878  T
Q  250 agcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 299  Q
    | ||| || | ||||||||| |||||||  |||||| |||| ||||||||    
T  12947877 aacatacccacttctcttggtaagctaccactcaaagagttatgtgacaa 12947828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 299
Target Start/End: Complemental strand, 12906621 - 12906374
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttccctt 152  Q
    |||||||||||| | ||||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||||||||| || |||||||||| ||    
T  12906621 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttccgttaaaggagttccttt 12906522  T
Q  153 gcaagagaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 251  Q
    ||||  |||  ||||| ||||||   ||||||||||| |   | |||||||||||| | |||| ||| ||||| |||||||  |   ||||||||||||     
T  12906521 gcaaatgaatatattctaagcttgtacattcaccaatttctctcggaatatcaccagatagatgattctcagagacatctaattctgcaatattttttaa 12906422  T
Q  252 catgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 299  Q
    ||| || | ||||||||| ||  ||| ||||||| |||| ||||||||    
T  12906421 catacccacttctcttggtaaagtaccgctcaaagagttatgtgacaa 12906374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 53 - 299
Target Start/End: Complemental strand, 12931710 - 12931463
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttccctt 152  Q
    |||||||||||| | ||||||||||| |||||||||||||||  ||||||||||||  ||| ||||||||||||||||||||| ||||||||||||| ||    
T  12931710 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttccgttgaaggagttccttt 12931611  T
Q  153 gcaagagaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatcta--gcttaccaatatttttt 249  Q
    ||||  |||  ||||| ||||||   ||||||||||| |   |||||||||||||| | |||| ||| ||||| |||||||  ||||  |||||||||||    
T  12931610 gcaaatgaatatattctaagcttgtacattcaccaatttctctaggaatatcaccagatagatgattctcagagacatctaatgctt--caatatttttt 12931513  T
Q  250 agcatgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 299  Q
    | ||| || | ||||||||| |||||||  || ||| |||| ||||||||    
T  12931512 aacatacccacttctcttggtaagctaccacttaaagagttatgtgacaa 12931463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 12899001 - 12898865
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttccctt 152  Q
    |||||||||||| | ||||||||||| |||| ||||||||||  ||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||    
T  12899001 ggaattgatccagacaattgatttcttgaaaagtctaaatattgaagacctttaagagaagccaaagaggacggtattgttccgttgaaggagttccttt 12898902  T
Q  153 gcaagagaaggtattccaagcttacgcattcaccaat 189  Q
    |||| ||||  ||||| | ||||   |||||||||||    
T  12898901 gcaaaagaatatattctatgcttgtacattcaccaat 12898865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 298
Target Start/End: Complemental strand, 12957509 - 12957263
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttccctt 152  Q
    |||||||||||| | ||||||||||| |||| ||||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||  ||||| ||    
T  12957509 ggaattgatccagacaattgatttcttgaaacgtctaaatattgaagacctttgagagaagctaaagaggacggtattgttccattgaagatgttccttt 12957410  T
Q  153 gcaagagaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 251  Q
    ||||  |||  ||||| ||| ||   ||||||||||| |   | |||||||||||| | |||| ||| ||||| |||||||  |   ||||||||||||     
T  12957409 gcaaacgaatatattctaagattgtacattcaccaatttctctcggaatatcaccagatagatgattctcagagacatctaaatcttcaatattttttaa 12957310  T
Q  252 catgccaagttctcttggcaagctactgctcaaaaagttctgtgaca 298  Q
    ||| || | |||| |||| ||| ||| ||||||| |||| |||||||    
T  12957309 catacccacttctgttggtaaggtaccgctcaaagagttatgtgaca 12957263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 299
Target Start/End: Original strand, 17924181 - 17924428
Alignment:
Q  53 ggaattgatccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttccattgaaggagttccctt 152  Q
    |||||||||||| | ||||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||    
T  17924181 ggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttccgttgaaggagttccttt 17924280  T
Q  153 gcaagagaaggtattccaagcttacgcattcaccaatat-gataggaatatcaccaaacagattattttcagaaacatctagcttaccaatattttttag 251  Q
    ||||  |||  ||||| |||||||  ||||||||||| |   | |||||||||||| | |||| ||| ||||| |||||||  |   ||||||||||||     
T  17924281 gcaaatgaatatattctaagcttatacattcaccaatttctctcggaatatcaccagatagatgattctcagagacatctaattcttcaatattttttaa 17924380  T
Q  252 catgccaagttctcttggcaagctactgctcaaaaagttctgtgacaa 299  Q
    ||| |  | ||||||||| ||| |||  |||||| |||| ||||||||    
T  17924381 catactcacttctcttggtaaggtaccactcaaagagttatgtgacaa 17924428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 31468020 - 31468114
Alignment:
Q  133 tccattgaaggagttcccttgcaagagaaggtattccaagcttacgcattcaccaat-atgataggaatatcaccaaacagattattttcagaaa 226  Q
    ||||| |||||| || ||||||||   |||||| ||||||||||||||||| |||||  |  |||||||||||||| | |||||||| |||||||    
T  31468020 tccatggaaggaatttccttgcaaataaaggtactccaagcttacgcattccccaatcgttctaggaatatcaccagatagattattctcagaaa 31468114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University