View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_123 (Length: 322)
Name: NF13763_low_123
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_123 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 47762998 - 47763257
Alignment:
| Q |
11 |
cacagaaacatattaaatcctcataaaattcgtatgttttaaactatcatgtttaaacaaatagaaaaaagtttatttaccaagtatgatgaaagttgta |
110 |
Q |
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| T |
47762998 |
cacagaaacatattaaatcctcataaaattcttatgttttaaactatcatgtttaaacaaatagaaaaaagtttatttagcaagtatgatgaaagttgta |
47763097 |
T |
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| Q |
111 |
aaatatgtcaatcataaacttctcagttagaaatgtgcatcgtatatatgcacacaattttcttcattatatcccaaacttgcaagtgtgaatggtatca |
210 |
Q |
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| T |
47763098 |
aaatatgtcaatcataaacttctcagttagaaatgtgcatcgtatatatgcacacaattttcttcattatatcccaaacttgcaagtgtgaatggtatca |
47763197 |
T |
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| Q |
211 |
ataaaaccaccacatttcagaaataaaagaccccaattagaaagaaaaacacaaactgat |
270 |
Q |
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| T |
47763198 |
ataaaaccaccacatttcagaaataaaagaccccaattagaaagaaaaacacaaactgat |
47763257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 270
Target Start/End: Complemental strand, 24765743 - 24765634
Alignment:
| Q |
162 |
acacaattttcttcattatatcccaaacttgcaagtgtgaatggtatcaataaaaccaccacatttcagaaat-aaaagaccccaattagaaag-aaaaa |
259 |
Q |
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| T |
24765743 |
acacaattttctt-attatatccaaaacttgcaagcgtcaatagtatcaataaaatcaccacattacagaaataaaaaaactccaattagaaagaaaaaa |
24765645 |
T |
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| Q |
260 |
cacaaactgat |
270 |
Q |
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| T |
24765644 |
cacaaactgat |
24765634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 24765869 - 24765821
Alignment:
| Q |
9 |
agcacagaaacatattaaatcctcataaaattcgtatgttttaaactat |
57 |
Q |
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|||||| ||||| ||||||||||| |||||||| |||||||| |||||| |
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| T |
24765869 |
agcacataaacaaattaaatcctcgtaaaattcttatgttttgaactat |
24765821 |
T |
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