View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_127 (Length: 318)
Name: NF13763_low_127
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_127 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 40762948 - 40763240
Alignment:
| Q |
1 |
aagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatatgcaggagtatttaaattactatag |
100 |
Q |
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| T |
40762948 |
aagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatatgcaggagtatttaaattactatag |
40763047 |
T |
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| Q |
101 |
tcctagctcctaagtgtattgaaattacaaaatagtatatgagtatgnnnnnnnngttagtaatttcatgg-accaaactaataaacggaaaacatattt |
199 |
Q |
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| T |
40763048 |
tcctagctcctaagtgtattgaaattacaaaatagtatatgagtat---------gtt-----ttttttggtaccaaactaataaacggaaaacatattt |
40763133 |
T |
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| Q |
200 |
gactttgagtgtgccaaaaccgaatgtcacttttatccgcctattttaatcaatataccgatagaacaacagaattaagatacatctttattggacatta |
299 |
Q |
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| T |
40763134 |
gactttgagtgtgtcaaaaccgaatgtcacttttatccgcctattttaatcaatatactgatagaacaacagaattaagatacatctttattggaaatta |
40763233 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 42910710 - 42910759
Alignment:
| Q |
259 |
gatagaacaacagaattaagatacatctttattggacattaccaaatact |
308 |
Q |
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| T |
42910710 |
gatagaacaacggaattaagatgcatctctattggaaattaccaaatact |
42910759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 42910360 - 42910424
Alignment:
| Q |
6 |
tcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttat |
70 |
Q |
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| T |
42910360 |
tcttgaatccttgcgtgattttgttcaccttcgttcaagaaccaacacggtgcgtttctttttat |
42910424 |
T |
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